PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00151.1.g00300.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Nin-like

Protein Properties

Length: 388aa MW: 42010.6 Da PI: 4.3694

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00151.1.g00300.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	59.2	8e-19	299	349	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++ d++ yF+lp+++A+k+L+vc TvLK R++G+kRWP+R i+++ Zjn_sc00151.1.g00300.1.sm.mk 299 TSKLERRDIACYFHLPMEEACKKLQVCGTVLKGVSRKFGLKRWPYRTINKI 349 678999******************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.88	289	370	IPR003035	RWP-RK domain
Pfam	PF02042	3.0E-17	302	349	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MAANGDNNDH GAEGQWLFDP LLVPDDLDDV MHLLNVPTDD DQYSPPQPAS TQNVATDGSY 60 SGNPLDGTAM AGNVGAYSSV DSTAHPAAVT AMAGGSSTNQ DVGASSSYVH QGVLDCTGCQ 120 MLREIMHIKG LETTKLCIHG VPGLFYHATL EVYHANNEGL ALEPTHQSFV DFIARDYAWV 180 KHYLIEYAQK RAAGGYTVVH DSTSDFLDVL CTSMAGVCVH ADDNGDVAAP AEAENGVAVD 240 EQTVPADAGD AVQPMIAQEE ILPDEPGPSE LRNDAVDDQE EQVVQPHARS TLAIQRERTS 300 KLERRDIACY FHLPMEEACK KLQVCGTVLK GVSRKFGLKR WPYRTINKID NKIAKLRENG 360 DGSAESMAEI QKLTDSRREI IDGPSEEI

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MAANGDNNDH GAEGQWLFDP LLVPDDLDDV MHLLNVPTDD DQYSPPQPAS TQNVATDGSY  60
SGNPLDGTAM AGNVGAYSSV DSTAHPAAVT AMAGGSSTNQ DVGASSSYVH QGVLDCTGCQ  120
MLREIMHIKG LETTKLCIHG VPGLFYHATL EVYHANNEGL ALEPTHQSFV DFIARDYAWV  180
KHYLIEYAQK RAAGGYTVVH DSTSDFLDVL CTSMAGVCVH ADDNGDVAAP AEAENGVAVD  240
EQTVPADAGD AVQPMIAQEE ILPDEPGPSE LRNDAVDDQE EQVVQPHARS TLAIQRERTS  300
KLERRDIACY FHLPMEEACK KLQVCGTVLK GVSRKFGLKR WPYRTINKID NKIAKLRENG  360
DGSAESMAEI QKLTDSRREI IDGPSEEI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021321666.1	3e-84	uncharacterized protein LOC8084238
TrEMBL	A0A368QD38	4e-96	A0A368QD38_SETIT; Uncharacterized protein
STRING	Si025242m	2e-86	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8055	29	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	3e-10	RWP-RK domain-containing protein