PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00148.1.g00620.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 442aa MW: 46305.3 Da PI: 9.55 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122 | 7e-38 | 58 | 206 | 2 | 129 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................. 65 g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LG+d++sk+ieWL+++a ai++l+++ Zjn_sc00148.1.g00620.1.sm.mk 58 SGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGYDQPSKAIEWLIKAAADAIDKLPSLdaaagfpshpasaagat 138 689*************************************************************78876655544444333 PP TCP 66 ...ssssaseceaesssssasnsssg.............kaaksaakskksqksaasalnlak.esr.......akarara 122 + a + +++ + +s+ s++s+ s+l+l++ e r a+ar+ra Zjn_sc00148.1.g00620.1.sm.mk 139 skdP---A-----------------PadadaavadvddqGNQQRSGCSSTSETSKGSVLSLSRsEGRvkarercAQARERA 199 2110...1.................12222233444443333333355555666666666666566622222225555556 PP TCP 123 rertrek 129 rer++ Zjn_sc00148.1.g00620.1.sm.mk 200 RERSAAA 206 6655544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.0E-39 | 59 | 205 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.856 | 60 | 118 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MEACGGGVGE ARKRGRVKDG ETGGELPDAK RRAAALAQQP WAAQQHPASR IYRVSRASGG 60 KDRHSKVYTA KGIRDRRVRL SVATAIQFYD LQDRLGYDQP SKAIEWLIKA AADAIDKLPS 120 LDAAAGFPSH PASAAGATSK DPAPADADAA VADVDDQGNQ QRSGCSSTSE TSKGSVLSLS 180 RSEGRVKARE RCAQARERAR ERSAAAGRDK DKDPGDDGGA TGRRATATAS SFTELLTGMA 240 AAAAAPAVAE HKQQASASWT PMTVSATADY IGFAQPRKAA GHAMAHTFAS PAPHLGNISM 300 APAAQHFGLS AGAVTVASGG GEPHAEMTQF SFLQDHFMPV HAVPASGPAG DYNLNFSMSS 360 GLVGVNSRGT LQSNSQPHIS GHHHHHQQQL QRLSTPLDAP NIPFLFSPAA AVTTPTTADT 420 QFAAFQLWNG FHHADMKEKG KN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-27 | 65 | 119 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 7e-27 | 65 | 119 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU190456 | 1e-140 | EU190456.1 Zea mays RFLP probe php20581 (CBM 2.10) genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020396804.1 | 0.0 | transcription factor PCF6 | ||||
TrEMBL | A0A1E5W0K9 | 0.0 | A0A1E5W0K9_9POAL; Transcription factor PCF6 | ||||
STRING | Pavir.Ba03864.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 4e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |