PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00147.1.g00190.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Dof | ||||||||
Protein Properties | Length: 297aa MW: 31324.6 Da PI: 10.4144 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 92.7 | 2.9e-29 | 184 | 240 | 4 | 60 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 + l+cprC s++tkfCy+nny++ qPr++C+aCrryWt+GGalr v ++ r++ + Zjn_sc00147.1.g00190.1.am.mk 184 EPLPCPRCGSRETKFCYFNNYNVRQPRHLCRACRRYWTAGGALRRVTTASSGRRRLR 240 5789******************************************98876665543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-21 | 184 | 229 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.4E-26 | 185 | 238 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 25.499 | 186 | 240 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 188 | 224 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MRVSIIFVLH LSSIRRKNEE GYLLVTLTEI VPVNKTLSPG TGSFVDSADP HKNLDQHKTS 60 RDQSIIIHDK AAPTKVKRLR DDHLHLLHSL FPRIKAAGVP NDASLLPFGS MDADAAGFKL 120 FGKVIQPPDA HQRAAEESVA TPPPPPPPPP ESMTPSQTLP TLPSSLPAAA AAAAAPSAAG 180 GTGEPLPCPR CGSRETKFCY FNNYNVRQPR HLCRACRRYW TAGGALRRVT TASSGRRRLR 240 SSAARSASAA AAAVAASASS ASAADERGAR ACVTQCRPIL PHASATGRSA CGPAEPS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003223 | 5e-63 | AP003223.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0007F06. | |||
GenBank | AP003264 | 5e-63 | AP003264.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485G01. | |||
GenBank | AP014957 | 5e-63 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14716 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29160.1 | 1e-22 | Dof family protein |