PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00144.1.g00640.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 334aa    MW: 35814.4 Da    PI: 9.9514
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00144.1.g00640.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-05178201123
                                   EEETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                   ++C dC+++F   ++L+ H  + H
  Zjn_sc00144.1.g00640.1.sm.mk 178 FPCADCDEVFVKTESLELHRAKrH 201
                                   89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.182178206IPR007087Zinc finger, C2H2
PROSITE patternPS000280180201IPR007087Zinc finger, C2H2
SuperFamilySSF563992.45E-6203319No hitNo description
Gene3DG3DSA:3.90.228.105.8E-5204322IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MNGEAGKTTT KKPSHSWMTM GLYYPSSGKS GGQAKAAMST EGKNGGTNEK RNSGGDKKKR  60
SMSLSITRSV ACAGSICSTK ESSVMSRDRG ASASSRSLRA PNDVVSAAAV SATSSFNSEA  120
TATTTVTVSS SSPFSSALSS PLSSLGGSSF RGVQIRKLSG CYSCQSVFDP RSLDTSTFPC  180
ADCDEVFVKT ESLELHRAKR HAVSELGPED TSRNIVQIIF QSSWLRKQAP VCRIERILKV  240
QSGDGTVKRF EQYKESIKER ASNDQGKKNA RCVADGNELL RFYATTFTCA LGASGGTALC  300
GAPWTQCKLC GIIKDGFRYS LKQTFRYVNK ICPY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002449060.21e-115cell wall integrity and stress response component 1
TrEMBLA0A1B6PQ861e-113A0A1B6PQ86_SORBI; Uncharacterized protein
STRINGSb05g004260.11e-114(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-57C2H2-like zinc finger protein