PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00144.1.g00230.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 466aa    MW: 50669.6 Da    PI: 8.7045
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00144.1.g00230.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.8e-17201248148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEd++l+ ++k +G g+W++ ++  g+ R++k+c++rw +yl
  Zjn_sc00144.1.g00230.1.am.mk 201 KGAWTKEEDQRLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 248
                                   79******************************99************97 PP
2Myb_DNA-binding57.43.4e-18254298147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg++T+eEdel+++ ++++G++ W++Ia +++ gRt++++k++w+++
  Zjn_sc00144.1.g00230.1.am.mk 254 RGNFTEEEDELIIKFHELFGNK-WSLIAGRLP-GRTDNEIKNYWNTH 298
                                   89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-23192251IPR009057Homeodomain-like
PROSITE profilePS5129416.206196248IPR017930Myb domain
SMARTSM007177.4E-14200250IPR001005SANT/Myb domain
SuperFamilySSF466892.12E-29200295IPR009057Homeodomain-like
PfamPF002495.2E-15201248IPR001005SANT/Myb domain
CDDcd001673.76E-11203248No hitNo description
PROSITE profilePS5129428.684249303IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.2E-28252303IPR009057Homeodomain-like
SMARTSM007174.0E-18253301IPR001005SANT/Myb domain
PfamPF002491.6E-16254298IPR001005SANT/Myb domain
CDDcd001678.15E-14256299No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MDGMVSVVDH PENGLRVHNT PVASVKQMRW KETERAVCVM SEQVSACRSV EKQQPAELPA  60
HQSCCPISPT RGEKTDPSGR FGSMQLRGAG GAAAGVLTRP CTTTCLAPRS VVFHCVVWMV  120
GWLAGLGRGL VGTQLSRSGS GRKLALRLST TTTNTTTSLH QILFLPLSLH DDNTNGIEEQ  180
AELQAAYMGR SPCCEQAHTN KGAWTKEEDQ RLIAYIKAHG EGCWRSLPKA AGLLRCGKSC  240
RLRWINYLRP DLKRGNFTEE EDELIIKFHE LFGNKWSLIA GRLPGRTDNE IKNYWNTHIK  300
RKLLARGIDP QTHRPVSATA APAQPQQPHY QPPAQKPASP PGGHHHHQPP SQSPVACSHS  360
SDEEPRPATS PPPRLLDIDL NLSISLAPYQ PAEESGDDKP LTLVPATTTT AEAGGINVVP  420
VCRCLNSLGY RPGVECVCGG GGGASSRRQK PWARSSLLQA TPCYRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-292013037108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0547581e-168BT054758.1 Zea mays full-length cDNA clone ZM_BFb0028G03 mRNA, complete cds.
GenBankKJ7267961e-168KJ726796.1 Zea mays clone pUT2285 MYB transcription factor (MYB64) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826560.11e-138myb-related protein 308-like
SwissprotQ9SZP11e-88MYB4_ARATH; Transcription repressor MYB4
TrEMBLA0A2S3ICU81e-137A0A2S3ICU8_9POAL; Uncharacterized protein
STRINGPavir.Ha00871.1.p1e-132(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.16e-86myb domain protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]