PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00143.1.g00970.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 593aa    MW: 63857 Da    PI: 10.355
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00143.1.g00970.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-19419469256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f++ae+Aa a+++a+ +l+g+
  Zjn_sc00143.1.g00970.1.am.mk 419 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDSAEDAAIAYDKAAFRLRGA 469
                                   59******9.**********955...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.01E-29418476No hitNo description
SuperFamilySSF541711.05E-21419476IPR016177DNA-binding domain
SMARTSM003801.4E-35419482IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-31419477IPR001471AP2/ERF domain
PROSITE profilePS5103223.037419476IPR001471AP2/ERF domain
PRINTSPR003677.8E-10420431IPR001471AP2/ERF domain
PfamPF008472.4E-12420468IPR001471AP2/ERF domain
PRINTSPR003677.8E-10442458IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MPHERISPPR HVLPLKIARA NKLRELSTRS QCAVDVLGGR PNLPLAVIRE FGAPPPFHKR  60
TVPFHVHRRR HRVADACMRS SAEHADAAPA GPGTSAPMRS NQRRHPVRGA ARRSSYPPGR  120
DLATSDRPGR AASDRHRNCG TAGIGGCWPV GCMCGTNYRE CRARGDFPPY INPGAGGQQS  180
PRATPPPPPP PPPHYTPPHN TSLPCHHRPA IINPSTSPVR PSDPSQLPTQ PPPPDTTAAT  240
APVFLLHFLV VGRTEIRRTF FLSGILLLSS ASSSSSADQE LMKALEPFIR SASPTSTFTS  300
TSPFYSYTSH ATSALPQDSY HYFPASSSYY TALPPPPAPT ATSFSQLPPL PPSSSYASPA  360
TLVDGAAGLA HLSQAQIQQI QTQLLAQQHQ QQQRGLAASF LGPRAQLMKH PSSAAAGKLY  420
RGVRQRHWGK WVAEIRLPRN RTRLWLGTFD SAEDAAIAYD KAAFRLRGAA ARLNFPSLRR  480
GGAHLAGPLD ASVDAKLAAI CRSLDASTKP RAAAHPDSPK ASASTTTSEG DESVHSASSP  540
PPLTAPSQQL QKPAPPLPEM ASLDFTEAPW DESATFHLDK FPSWEIDWDA ILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-21415476163ATERF1
3gcc_A8e-21415476163ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3650404e-99AK365040.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2030H17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659105.11e-113ethylene-responsive transcription factor RAP2-13
TrEMBLA0A3L6PCC81e-112A0A3L6PCC8_PANMI; Ethylene-responsive transcription factor RAP2-13-like
STRINGPavir.Da01302.1.p1e-130(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.13e-36related to AP2 4