PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00142.1.g00690.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YC

Protein Properties

Length: 414aa MW: 45307 Da PI: 8.1994

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00142.1.g00690.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	132.1	1.8e-41	266	369	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksd 78 ql++ w++q e++t+fk +++Pl+rikki+kad dvkm++ eaPv+++kace+fi eltlr+wl+a+ kr tl++ d Zjn_sc00142.1.g00690.1.am.mk 266 QLQALWADQmaeSEQETEFKLNAIPLTRIKKIMKADRDVKMVAGEAPVVFAKACEMFIQELTLRAWLKAQWFKRMTLRRKD 346 799**996656999************************************************************* PP NF-YC 79 iaaavtrtdifdflvdivprdel 101 + aa+ + d+fdflvdi+p del Zjn_sc00142.1.g00690.1.am.mk 347 VVAAIIQNDMFDFLVDIIPPDEL 369 *****************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	5.87E-24	257	360	IPR009072	Histone-fold
Pfam	PF00808	6.9E-15	289	351	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	3.3E-29	290	365	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MGVTDNYTAG QKHPPVSFVS GAVDAPASTD AMARPAERST EAGDEKEKRS ARSAEEDLAT 60 ARGRACADGE LGGGGGGSGD KIKWHSRYYG DRPGILFRLT GPTFLRARRE QAPRRRLTAP 120 IRRAQVSPPS PFSNHRRRFL RRSPSTRPAV TSSYPSSRAA GFEAHAVAAC LRTFQIAGGS 180 GSSYSNCRLK CVFDMEQPSP ANVNGGVTDS DTSAASSPMP YEHVPLAYVP PSAGAAIPPS 240 SEERQNAFHR ALQLDQQKQQ QYLQEQLQAL WADQMAESEQ ETEFKLNAIP LTRIKKIMKA 300 DRDVKMVAGE APVVFAKACE MFIQELTLRA WLKAQWFKRM TLRRKDVVAA IIQNDMFDFL 360 VDIIPPDELK EAGVAAMLPP TTAPAMGPSY VPEMTYENQE QQRSTSDGGG DELD

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MGVTDNYTAG QKHPPVSFVS GAVDAPASTD AMARPAERST EAGDEKEKRS ARSAEEDLAT  60
ARGRACADGE LGGGGGGSGD KIKWHSRYYG DRPGILFRLT GPTFLRARRE QAPRRRLTAP  120
IRRAQVSPPS PFSNHRRRFL RRSPSTRPAV TSSYPSSRAA GFEAHAVAAC LRTFQIAGGS  180
GSSYSNCRLK CVFDMEQPSP ANVNGGVTDS DTSAASSPMP YEHVPLAYVP PSAGAAIPPS  240
SEERQNAFHR ALQLDQQKQQ QYLQEQLQAL WADQMAESEQ ETEFKLNAIP LTRIKKIMKA  300
DRDVKMVAGE APVVFAKACE MFIQELTLRA WLKAQWFKRM TLRRKDVVAA IIQNDMFDFL  360
VDIIPPDELK EAGVAAMLPP TTAPAMGPSY VPEMTYENQE QQRSTSDGGG DELD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-32	274	365	3	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2T7D4J5	2e-43	A0A2T7D4J5_9POAL; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15703	12	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	3e-42	nuclear factor Y, subunit C2