PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00142.1.g00220.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Nin-like

Protein Properties

Length: 401aa MW: 45265.3 Da PI: 10.6507

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00142.1.g00220.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	58.3	1.5e-18	116	157	9	50
RWP-RK 9 dlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++++ F+l i+dAA eLg+c++ +K iCR++G++RWP Rk++ Zjn_sc00142.1.g00220.1.am.mk 116 EIRARFHLRIEDAAAELGICQSSIKGICRKHGVPRWPGRKVR 157 7999************************************96 PP
2	RWP-RK	31.4	3.7e-10	281	318	14	51
RWP-RK 14 FslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 +l ++dAA Lg+++ LK CR +G++RWP ++s Zjn_sc00142.1.g00220.1.am.mk 281 LHLRLNDAAAALGISTDRLKFVCRSNGLRRWPGMTVRS 318 6999****************************777666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.311	94	179	IPR003035	RWP-RK domain
Pfam	PF02042	3.3E-16	116	157	IPR003035	RWP-RK domain
PROSITE profile	PS51519	11.672	259	339	IPR003035	RWP-RK domain
Pfam	PF02042	5.1E-9	279	318	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MQGQVRPVPV GMPAAREGNR CDLKSSRHLH FIYTDSTCRC TKSPTREEKK DLMKHLLVAV 60 DRYDVEKLKS DYNMAAVVAS EGYSHLKESC TDVLEELRGL KNRGKKRTMD EPEWPEIRAR 120 FHLRIEDAAA ELGICQSSIK GICRKHGVPR WPGRKVRFML GQLGKLAIEA RARQGAAPGE 180 EGGHRRREMI AMDISKVLEE VARVLQLLPS SDANPTTTII LTAEDRDCGS VLFKGLQDWR 240 RWSVTWPPPS TEKKATLVLV VFTMPRRRAA SPPWSEVLGV LHLRLNDAAA ALGISTDRLK 300 FVCRSNGLRR WPGMTVRSLN AKLRRLIQEA AVARADALPW WQAPHRRRLG TITREARRVI 360 HDLDGIYERV RNLAPLPQRA SDGTLNLIDN VGVSRANNGF Y

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MQGQVRPVPV GMPAAREGNR CDLKSSRHLH FIYTDSTCRC TKSPTREEKK DLMKHLLVAV  60
DRYDVEKLKS DYNMAAVVAS EGYSHLKESC TDVLEELRGL KNRGKKRTMD EPEWPEIRAR  120
FHLRIEDAAA ELGICQSSIK GICRKHGVPR WPGRKVRFML GQLGKLAIEA RARQGAAPGE  180
EGGHRRREMI AMDISKVLEE VARVLQLLPS SDANPTTTII LTAEDRDCGS VLFKGLQDWR  240
RWSVTWPPPS TEKKATLVLV VFTMPRRRAA SPPWSEVLGV LHLRLNDAAA ALGISTDRLK  300
FVCRSNGLRR WPGMTVRSLN AKLRRLIQEA AVARADALPW WQAPHRRRLG TITREARRVI  360
HDLDGIYERV RNLAPLPQRA SDGTLNLIDN VGVSRANNGF Y

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP47124	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	2e-09	Nin-like family protein