PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00141.1.g01030.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 324aa MW: 37387.7 Da PI: 7.2529

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00141.1.g01030.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	130	1.8e-40	16	127	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 +ppGfrFhPtdeelv++yL+kkv++++++l +vik+ +++e+yfFs++dkky+tg+r+nrat++g Zjn_sc00141.1.g01030.1.am.mk 16 VPPGFRFHPTDEELVDYYLRKKVASRRIDL-NVIKD-----------------DQNEYYFFSHKDKKYPTGTRTNRATAAG 78 69***********************888.55554.................6789******************** PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 +Wkatg+dk+++++ +++lvg++ktLv+ykgrap+g+k+dW+mheyrle Zjn_sc00141.1.g01030.1.am.mk 79 FWKATGRDKPIYANkQRQLVGMRKTLVYYKGRAPNGHKSDWIMHEYRLE 127 ********9856777**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.54E-51	8	153	IPR003441	NAC domain
PROSITE profile	PS51005	39.311	16	153	IPR003441	NAC domain
Pfam	PF02365	3.6E-27	17	126	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MGMSSTQAQA HQQQLVPPGF RFHPTDEELV DYYLRKKVAS RRIDLNVIKD DQNEYYFFSH 60 KDKKYPTGTR TNRATAAGFW KATGRDKPIY ANKQRQLVGM RKTLVYYKGR APNGHKSDWI 120 MHEYRLETNE NGPPQASHLL HEEGWVVCRV FKKRLPTTRR ESDHDAPCWY VDDDGPFMHD 180 LNSPMSGMPP HHSMALQEQH LQMLNNTYKR ELKLQFQTPS HHAFSNIPHD LESTASFHSL 240 LVSPDDHQIN VHHPNQHVQL VESAVDQVTD WRVLDKFVAS QLSHDATKSV DYTDGEILQV 300 NEKQEVGNGY ASTSTSSSQI DPWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-39	1	154	1	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT075090	1e-127	KT075090.1 Panicum virgatum secondary wall NAC master switch (SWN7A) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004964278.1	0.0	NAC domain-containing protein 105
Swissprot	Q9FWX2	1e-89	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	K3XY21	0.0	K3XY21_SETIT; Uncharacterized protein
STRING	Si006829m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12102	30	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-81	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]