PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00141.1.g00650.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRF | ||||||||
Protein Properties | Length: 450aa MW: 48855.5 Da PI: 10.0072 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.9 | 2.1e-24 | 203 | 247 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep+rCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ Zjn_sc00141.1.g00650.1.sm.mkhc 203 DPEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVES 247 79****************************************986 PP | |||||||
2 | QLQ | 62.5 | 1.2e-21 | 133 | 167 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FTaaQ+++L++Q+l+yKyL+a++PvPp+Ll++i+ Zjn_sc00141.1.g00650.1.sm.mkhc 133 VFTAAQWAELEQQALIYKYLMAGVPVPPDLLLPIR 167 5********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.4E-12 | 132 | 168 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.468 | 133 | 168 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.2E-16 | 134 | 167 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 26.346 | 203 | 247 | IPR014977 | WRC domain |
Pfam | PF08879 | 5.6E-21 | 204 | 246 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MPLGRVASGY TRKRQTSKEG RAELRIAVGR ASASKSKPKR YLQIPHAHHA PPSPPFLPLL 60 LASINGRHQE PSNPHLTSST SAGSAPVLYR LLAWEGREGG QVDAETVAAS MLSSAAMGMG 120 GFPHQQQPRG AAVFTAAQWA ELEQQALIYK YLMAGVPVPP DLLLPIRPHS AAAFSFGPAI 180 GAASSFYHHP SLSYYAYYGK KLDPEPWRCR RTDGKKWRCS KEAHPDSKYC ERHMHRGRNR 240 SRKPVESKSA SPAHQSQPQL STVTNATRDT EPLQSLAMGA KTHGLSLGGA GSSQLQVDAS 300 SYGSKFSLGG KADVGELSFL SGASGNSRGF TIDSSSDSSW HSLSSNVPPF TLSTTRDSGL 360 LSGAYNYSNL EPSQELGQVT IATLSQDQER HSFNSGTGGL MKQENQSLRP FFDEWPATRD 420 SWSEDRRKPA REPELSRAAH KDGLEVRSSF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811709.1 | 1e-171 | growth-regulating factor 5-like isoform X1 | ||||
Swissprot | Q6AWY4 | 1e-171 | GRF5_ORYSJ; Growth-regulating factor 5 | ||||
TrEMBL | A0A0A9F0Q1 | 0.0 | A0A0A9F0Q1_ARUDO; Uncharacterized protein | ||||
STRING | Si008818m | 1e-169 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11046 | 24 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-30 | growth-regulating factor 5 |
Publications ? help Back to Top | |||
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