PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00141.1.g00400.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 711aa MW: 76555.2 Da PI: 6.1273 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 380.8 | 1.6e-116 | 281 | 650 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaa 80 v +L++cA+ +++ d ++a+ +Larl +asp+g +pm+R+aayf+eALa r++r++++l++ pp+e ++ ++ + a Zjn_sc00141.1.g00400.1.sm.mk 281 VGALTACADSLAAYDYQAANYYLARLGMIASPAGpTPMHRVAAYFAEALAIRVVRTWPHLFDVTPPRELTDGAvGDDDAVA 361 678*****************************************************************998887899999* PP GRAS 81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleet 161 l++++ ++Pi++f h+t N+ +l+a++g++rvH+iDfdi+qGlQWp Llq+La+R+++p ++RiTgvg+ sk+el+ t Zjn_sc00141.1.g00400.1.sm.mk 362 LRVLNAITPIPRFLHFTINERLLRAFDGHDRVHVIDFDIKQGLQWPGLLQSLAARANPPSHVRITGVGE----SKQELQDT 438 *********************************************************************....******** PP GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242 g rL ++A++lg+ fef++ v++rled++l++L+vk gE++aVn+vl++hrll ++ + + ++L l +s+ + ++ + Zjn_sc00141.1.g00400.1.sm.mk 439 GARLGHVAASLGLAFEFHA-VVDRLEDVRLWMLHVKGGECVAVNCVLAVHRLLCNENGT--ALADFLGLARSTGAAILLLG 516 *******************.7*******************************9554444..4589**************** PP GRAS 243 eqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322 e+e+ +ns+++ +rf+ al+yy+a fd++ +a+l+ +s +r+kvE++ ++rei+++va ega+r erhet++ Wr+ +ee+ Zjn_sc00141.1.g00400.1.sm.mk 517 EREVALNSGRWEARFACALRYYAAAFDAVdAAGLAYTSLARAKVEEM-FAREIRSAVAFEGADRLERHETFAGWRRLMEEC 596 *****************************9999**************.********************************* PP GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveee..sgslvlgWkdrpLvsvSaWr 374 GFk++ l++++a+q +++ r+++ y+v+ + ++l+l W ++++++vSaW+ Zjn_sc00141.1.g00400.1.sm.mk 597 GFKNAGLGDREAMQGRMITRMFAPSNYSVQAQgdGEALTLQWLNQAMYTVSAWT 650 ***********************666***9654256677**************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 53.89 | 254 | 628 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.7E-114 | 281 | 650 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 711 aa Download sequence Send to blast |
MEVSTCRSLG LAVDAVRALR SGMVAALQQE ENEEEGTEEE ERSGSLPGTS HPAVSRISRM 60 LAGCSFTSSR HHMSTTQRFD ILQCGLSKRS NRGGDGAAAQ RVAAADASTG GATCSFRAHP 120 APPVAQAVSW GAKPEPSGNV AGGGVWERSR AVKRAHEEDV VEEYGGPIVR AKRTRMGGEG 180 DEVWFRQPIA GTVQQAAPGE GEEGDEEKVF LVPSAAAFPH GMAAAGPSLA AAKQEEFSNS 240 PSPASSVGTD GGSSAVPPPD VHAKNGVPLT GEVAREAMEL VGALTACADS LAAYDYQAAN 300 YYLARLGMIA SPAGPTPMHR VAAYFAEALA IRVVRTWPHL FDVTPPRELT DGAVGDDDAV 360 ALRVLNAITP IPRFLHFTIN ERLLRAFDGH DRVHVIDFDI KQGLQWPGLL QSLAARANPP 420 SHVRITGVGE SKQELQDTGA RLGHVAASLG LAFEFHAVVD RLEDVRLWML HVKGGECVAV 480 NCVLAVHRLL CNENGTALAD FLGLARSTGA AILLLGEREV ALNSGRWEAR FACALRYYAA 540 AFDAVDAAGL AYTSLARAKV EEMFAREIRS AVAFEGADRL ERHETFAGWR RLMEECGFKN 600 AGLGDREAMQ GRMITRMFAP SNYSVQAQGD GEALTLQWLN QAMYTVSAWT PRPTATQEEA 660 RLSEEERTGF FSEYHGKGSL ICMSLASCFY RSTSRKELSV TRLRWTYAVE R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 9e-59 | 287 | 652 | 26 | 381 | Protein SCARECROW |
5b3h_A | 8e-59 | 287 | 652 | 25 | 380 | Protein SCARECROW |
5b3h_D | 8e-59 | 287 | 652 | 25 | 380 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004964401.1 | 0.0 | protein DWARF AND LOW-TILLERING | ||||
Swissprot | Q9LWU9 | 0.0 | DLT_ORYSJ; Protein DWARF AND LOW-TILLERING | ||||
TrEMBL | A0A1E5WNH3 | 0.0 | A0A1E5WNH3_9POAL; Scarecrow-like protein 28 | ||||
STRING | Si008220m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6404 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 1e-126 | GRAS family protein |
Publications ? help Back to Top | |||
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