PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00141.1.g00110.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family BBR-BPC
Protein Properties Length: 323aa    MW: 35714.3 Da    PI: 9.9498
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00141.1.g00110.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind389.74.3e-11913231301
                       GAGA_bind   1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkala 68 
                                     md+ g+re  r+++ +y+        p++++k++ +++l+++++e+d++irer++al+ekkaa+aerdmaf+qrd+a+a
  Zjn_sc00141.1.g00110.1.am.mkhc   1 MDNLGHREngRQRPdQYKamhtewmmPQRQIKDHHSMNLLALMNEKDSAIRERDHALAEKKAAIAERDMAFAQRDAAMA 79 
                                     9999*99999****99*99****999889************************************************** PP

                       GAGA_bind  69 ernkalverdnkllalllvensla...salpvgvqvlsgtksidslqqlse.pqledsave.lreeeklealpieeaae 142
                                     ern+a+verdn+l+al+l++++     + +++ ++ l+gtk+i++++ +s   ql+ds+++ ++e++++ea+pi+ a+ 
  Zjn_sc00141.1.g00110.1.am.mkhc  80 ERNAAIVERDNALAALELARTNGLnmnNGSGFHQGPLNGTKNIHHSHVQSSpLQLADSPYDhAKEMHISEAYPISAAPG 158
                                     ****************99888765555778889999**********9977769********999*************** PP

                       GAGA_bind 143 eakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader......skaekksidlvlngvslDestlPvPvCsC 215
                                     ++ + kk+ k++++++p+++ +   +k++++++k+   ++a e+      sk+e+k++dl+ln+vs+Dest+P+P+CsC
  Zjn_sc00141.1.g00110.1.am.mkhc 159 SVGKGKKPTKNHSQASPLKRPSGVLRKTKKTNWKNGGLSGAGEDsarasaSKNEWKDQDLGLNQVSYDESTMPAPACSC 237
                                     ***********************888888888888877766533466777***************************** PP

                       GAGA_bind 216 tGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGt 294
                                     tG l+qCYkWGnGGWqS+CCt++iS+yPLPv+++rr+aR++grKmS+gaf+klL++LaaeG+dls+pvDLk hWAkHGt
  Zjn_sc00141.1.g00110.1.am.mkhc 238 TGELHQCYKWGNGGWQSSCCTMSISMYPLPVMPNRRHARMGGRKMSGGAFTKLLSRLAAEGHDLSTPVDLKYHWAKHGT 316
                                     ******************************************************************************* PP

                       GAGA_bind 295 nkfvtir 301
                                     n+++tir
  Zjn_sc00141.1.g00110.1.am.mkhc 317 NRYITIR 323
                                     ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.4E-1591323IPR010409GAGA-binding transcriptional activator
PfamPF062176.6E-961323IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDNLGHRENG RQRPDQYKAM HTEWMMPQRQ IKDHHSMNLL ALMNEKDSAI RERDHALAEK  60
KAAIAERDMA FAQRDAAMAE RNAAIVERDN ALAALELART NGLNMNNGSG FHQGPLNGTK  120
NIHHSHVQSS PLQLADSPYD HAKEMHISEA YPISAAPGSV GKGKKPTKNH SQASPLKRPS  180
GVLRKTKKTN WKNGGLSGAG EDSARASASK NEWKDQDLGL NQVSYDESTM PAPACSCTGE  240
LHQCYKWGNG GWQSSCCTMS ISMYPLPVMP NRRHARMGGR KMSGGAFTKL LSRLAAEGHD  300
LSTPVDLKYH WAKHGTNRYI TIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141822.10.0BBR/BPC transcription factor
RefseqXP_008658294.10.0BBR/BPC transcription factor isoform X1
SwissprotQ5VSA80.0BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBLA0A3L6DC170.0A0A3L6DC17_MAIZE; Barley B recombinant-like protein D
TrEMBLB4FYC00.0B4FYC0_MAIZE; BBR/BPC transcription factor
STRINGGRMZM2G118690_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62263756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.13e-97basic pentacysteine 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]