PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00140.1.g00560.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 218aa MW: 24013 Da PI: 7.1148 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.6 | 6.6e-14 | 23 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 rg W++eEde+l ++ +G tW+++a+ ++R++k+c++rw +yl Zjn_sc00140.1.g00560.1.sm.mk 23 RGLWSPEEDERLFTQITCHGVSTWSSVAQLAViilhsgLRRSGKSCRLRWMNYL 76 788*************************************************97 PP | |||||||
2 | Myb_DNA-binding | 36.9 | 8.2e-12 | 84 | 125 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + ++ E+e ++ + k lG++ W++Ia++++ gRt++ +k+ w++ Zjn_sc00140.1.g00560.1.sm.mk 84 PISEREEETIISLQKSLGNR-WSAIAAELP-GRTDNAIKNNWNS 125 66899***************.*********.*********9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.917 | 18 | 76 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-8 | 22 | 78 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.26E-26 | 22 | 123 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-11 | 23 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-18 | 24 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.97E-7 | 26 | 76 | No hit | No description |
PROSITE profile | PS51294 | 20.219 | 77 | 131 | IPR017930 | Myb domain |
SMART | SM00717 | 7.7E-10 | 81 | 129 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-22 | 84 | 131 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.6E-10 | 84 | 125 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-7 | 84 | 124 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MARKPNQHAA AGTGAAAEKK ERRGLWSPEE DERLFTQITC HGVSTWSSVA QLAVIILHSG 60 LRRSGKSCRL RWMNYLRPDL RKEPISEREE ETIISLQKSL GNRWSAIAAE LPGRTDNAIK 120 NNWNSRIRKR LNAAANAGQC RAGYSTAEGQ APAAGEKEEH TNNAAKAAAP SPIPVYACQL 180 LDGGAQAFHE LDYVDDLLID VPGHMEAWES ELFSLDIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-24 | 23 | 131 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ909523 | 4e-35 | FJ909523.1 Zea mays subsp. mays Mu tranposon insertion Mu1007143 flanking sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968332.1 | 1e-81 | transcription factor MYB57 | ||||
Swissprot | P20027 | 7e-43 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | A0A2T7DRN8 | 1e-82 | A0A2T7DRN8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J24104.1.p | 3e-82 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8703 | 25 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 1e-42 | myb domain protein 61 |