PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00138.1.g00180.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 349aa MW: 38895.2 Da PI: 7.1875 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.2 | 5.6e-52 | 10 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknr 76 +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++k+ePwdL+ ++ ++ + ewyfFs++dkky+tg+r+nr Zjn_sc00138.1.g00180.1.am.mkhc 10 VPPGFRFHPTDEELLYYYLRKKVSYEPIDL-DVIREIDLNKLEPWDLKDrcRIGTGPQdEWYFFSHKDKKYPTGTRTNR 87 69****************************.9***************943455444445******************** PP NAM 77 atksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 at++g+Wkatg+dk+++ g+ +gl+ktLvfy+grap+g+ktdW+mheyrl Zjn_sc00138.1.g00180.1.am.mkhc 88 ATAAGFWKATGRDKAIFLGnAGSRIGLRKTLVFYTGRAPHGKKTDWIMHEYRL 140 *****************9767788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.19E-59 | 7 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.756 | 10 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-27 | 11 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MHPSSSPLSV PPGFRFHPTD EELLYYYLRK KVSYEPIDLD VIREIDLNKL EPWDLKDRCR 60 IGTGPQDEWY FFSHKDKKYP TGTRTNRATA AGFWKATGRD KAIFLGNAGS RIGLRKTLVF 120 YTGRAPHGKK TDWIMHEYRL DEDNVEVRQV PEDGWVVCRV FKKKSIQRSF EQPSMAPGDE 180 DELQSLTPVD QKQALHQHLM HGGFPAFDPS MHLPQLASPD AIPGPGVAPA FMSGTLPAAM 240 NPLEMVCSSQ YTAKLTTTAL AGGNAGESLL NSGDRFGAAA ADWSILDKLL ASHQNLDQLV 300 HGKFGGVAVE APRHYQQQQL LMEMGSSSLQ RLPLHYLGCE AADLVKFSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-52 | 8 | 165 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-52 | 8 | 165 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-52 | 8 | 165 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-52 | 8 | 165 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-52 | 8 | 165 | 18 | 170 | NAC domain-containing protein 19 |
3swm_B | 7e-52 | 8 | 165 | 18 | 170 | NAC domain-containing protein 19 |
3swm_C | 7e-52 | 8 | 165 | 18 | 170 | NAC domain-containing protein 19 |
3swm_D | 7e-52 | 8 | 165 | 18 | 170 | NAC domain-containing protein 19 |
3swp_A | 7e-52 | 8 | 165 | 18 | 170 | NAC domain-containing protein 19 |
3swp_B | 7e-52 | 8 | 165 | 18 | 170 | NAC domain-containing protein 19 |
3swp_C | 7e-52 | 8 | 165 | 18 | 170 | NAC domain-containing protein 19 |
3swp_D | 7e-52 | 8 | 165 | 18 | 170 | NAC domain-containing protein 19 |
4dul_A | 6e-52 | 8 | 165 | 15 | 167 | NAC domain-containing protein 19 |
4dul_B | 6e-52 | 8 | 165 | 15 | 167 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827212.1 | 0.0 | NAC domain-containing protein 76-like | ||||
Swissprot | Q5Z6B6 | 1e-107 | NAC76_ORYSJ; NAC domain-containing protein 76 | ||||
TrEMBL | A0A1E5VY61 | 0.0 | A0A1E5VY61_9POAL; NAC domain-containing protein 76 (Fragment) | ||||
STRING | Pavir.Ab01037.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3461 | 37 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 1e-88 | NAC family protein |
Publications ? help Back to Top | |||
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