PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00135.1.g00750.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 731aa MW: 78033.8 Da PI: 8.921

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00135.1.g00750.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.9e-06	29	51	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F+r nL+ H r H Zjn_sc00135.1.g00750.1.am.mk 29 FVCEVCNRGFPREQNLQLHRRGH 51 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.05E-7	28	51	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-4	28	51	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.741	29	51	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0029	29	51	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	31	51	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.05E-7	100	125	No hit	No description
SMART	SM00355	230	105	125	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence Send to blast
MHLINDDDAD PDAEVIALSP GTLLATNRFV CEVCNRGFPR EQNLQLHRRG HNLPWRLKQK 60 NPKEARRKVY LCPEPTCVHH DPSRALGDLT GIKKHFCRKH GEKKWKCDKC NKLYGVQSDW 120 KAHSKTCGTR EYRCDCGKLF SRYPCLDSPF SIDPANFLAI ITIIFFLFFT ASESTLGIPT 180 GSREDIALPA SARPHASFLK DSFITHRAFC DALARESAQI TPLGTGLYVG SGGTALGVSG 240 GAPQMSAVFG TQAQPSAAAA AQLDHIMASF SSPSMFGSQA SACSSSFFLG GGGGPPPSQL 300 DFSEDGDYSQ GSQSSHLLHS KTPAGFHGLM QLPEQNQQGS KANGNLLNLG FFSNNSGGAA 360 AGQDARLVIQ DQFNGNTEQR SMTASVGNHL SGNFSSLYNS PGSASASDLP LNSATALLLK 420 AAQMGSTTSS NPNCTSALLR AAGFGGNAQQ GNSAAGEGSA ADETHIHDLI MNSLASGSGG 480 TGLDDGTRDF LGVGRGSMAS IGVHMGALDP AQMNLFETHA VDDNRRARHV RYRVPGKQSY 540 TGTRRTPPSQ LLLIAWARPY QCGEALALAC FFLDTPPGRR RLSLCMRHLT PAASARCFVG 600 SPGTRKREHA SKSTGRQGST RSAPCAQRGP CRLEEGSAWR ARWVEYTRAL TGRSIGDSTC 660 VRGSVCLWRW PGALGALPRE ALVGTTTRGL LLTPISADKL DSKQGRWSSW RLACSHRIQS 720 SPSIVLEAGC A

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence Send to blast

MHLINDDDAD PDAEVIALSP GTLLATNRFV CEVCNRGFPR EQNLQLHRRG HNLPWRLKQK  60
NPKEARRKVY LCPEPTCVHH DPSRALGDLT GIKKHFCRKH GEKKWKCDKC NKLYGVQSDW  120
KAHSKTCGTR EYRCDCGKLF SRYPCLDSPF SIDPANFLAI ITIIFFLFFT ASESTLGIPT  180
GSREDIALPA SARPHASFLK DSFITHRAFC DALARESAQI TPLGTGLYVG SGGTALGVSG  240
GAPQMSAVFG TQAQPSAAAA AQLDHIMASF SSPSMFGSQA SACSSSFFLG GGGGPPPSQL  300
DFSEDGDYSQ GSQSSHLLHS KTPAGFHGLM QLPEQNQQGS KANGNLLNLG FFSNNSGGAA  360
AGQDARLVIQ DQFNGNTEQR SMTASVGNHL SGNFSSLYNS PGSASASDLP LNSATALLLK  420
AAQMGSTTSS NPNCTSALLR AAGFGGNAQQ GNSAAGEGSA ADETHIHDLI MNSLASGSGG  480
TGLDDGTRDF LGVGRGSMAS IGVHMGALDP AQMNLFETHA VDDNRRARHV RYRVPGKQSY  540
TGTRRTPPSQ LLLIAWARPY QCGEALALAC FFLDTPPGRR RLSLCMRHLT PAASARCFVG  600
SPGTRKREHA SKSTGRQGST RSAPCAQRGP CRLEEGSAWR ARWVEYTRAL TGRSIGDSTC  660
VRGSVCLWRW PGALGALPRE ALVGTTTRGL LLTPISADKL DSKQGRWSSW RLACSHRIQS  720
SPSIVLEAGC A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-19	101	142	3	44	Zinc finger protein JACKDAW
5b3h_F	7e-19	101	142	3	44	Zinc finger protein JACKDAW
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY754865	1e-149	AY754865.1 Zea mays INDETERMINATE-related protein 7 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002462814.2	1e-152	protein indeterminate-domain 9
Refseq	XP_004957598.1	1e-152	protein indeterminate-domain 5, chloroplastic
Refseq	XP_004957599.1	1e-152	protein indeterminate-domain 5, chloroplastic
Refseq	XP_004957600.1	1e-152	protein indeterminate-domain 5, chloroplastic
Refseq	XP_021308608.1	1e-152	protein indeterminate-domain 9
Refseq	XP_021308609.1	1e-152	protein indeterminate-domain 9
TrEMBL	A0A1D6IAP1	1e-152	A0A1D6IAP1_MAIZE; Indeterminate1 domain7
STRING	Pavir.Ba01478.1.p	1e-153	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP24679	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-80	indeterminate(ID)-domain 4