PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00135.1.g00540.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 331aa    MW: 35344.8 Da    PI: 6.5426
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00135.1.g00540.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix40.76.1e-1323124186
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..............rergferspkqCkekwenlnkrykkikeg 67 
                                   +Wt++ +  L+ea++ ++   +r+klk  +W +++  +                +   ++p+qCk+k+e+++kry+++ + 
  Zjn_sc00135.1.g00540.1.sm.mk  23 EWTESGIARLLEAYEAKWLLRNRAKLKWSDWVDIAGEVsahcaedaaatgkpGGGNSAKTPNQCKNKIESMKKRYRAESAA 103
                                   5*******************************9999999999********877777899******************9998 PP

                      trihelix  68 ekkr..tsessstcpyfdqle 86 
                                   + +   ++ +  ++++f +++
  Zjn_sc00135.1.g00540.1.sm.mk 104 KARAgpAAAAGPSWRFFARMD 124
                                   8887445667789****9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.4E-1421125No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDGLPDGDAA PEASAAPPQK RDEWTESGIA RLLEAYEAKW LLRNRAKLKW SDWVDIAGEV  60
SAHCAEDAAA TGKPGGGNSA KTPNQCKNKI ESMKKRYRAE SAAKARAGPA AAAGPSWRFF  120
ARMDGLLKGP AGCSGQAQQV EPGNSIDLCA PAKAEVEAEA DFAAQLPDAG PGAFADPMNV  180
DANGSVPEKP EKVDNSVHKE SRAADSDANV SSPRSKVANE DAEEADKLCD LPKKRKTTEL  240
AIAKSIELLA SSFLKVEHAR MEMYRETERM RIEAEIKKGE MELKRAEIMA KTHLRIAKLF  300
AKRLKVGGGR TGGSSSVTAE VDTLTAKGED G
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1375921e-103AC137592.2 Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence.
GenBankAK0688341e-103AK068834.1 Oryza sativa Japonica Group cDNA clone:J013159M18, full insert sequence.
GenBankAK1036731e-103AK103673.1 Oryza sativa Japonica Group cDNA clone:J033136A07, full insert sequence.
GenBankAP0050901e-103AP005090.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1065_E04.
GenBankAP0149651e-103AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802935.11e-171trihelix transcription factor ASIL1-like
TrEMBLA0A0A9E1521e-178A0A0A9E152_ARUDO; Uncharacterized protein
STRINGPavir.Ba01421.1.p1e-176(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.14e-36sequence-specific DNA binding transcription factors