PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00133.1.g00850.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 880aa MW: 95468 Da PI: 9.9808 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.7 | 6.5e-14 | 249 | 296 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ lv ++ + G g W+ ar g++R +k+c++rw++yl Zjn_sc00133.1.g00850.1.am.mk 249 KGPWTLEEDLVLVSYISENGEGAWDNLARAAGLNRNGKSCRLRWLNYL 296 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 39.8 | 1e-12 | 302 | 345 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+ Ed + ++ G++ W++Ia++++ gRt++++k++w++ Zjn_sc00133.1.g00850.1.am.mk 302 RGSITEAEDAVIRELQSTIGNK-WSKIAKHLP-GRTDNEIKNYWRT 345 7889******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.609 | 244 | 296 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.59E-28 | 247 | 343 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.7E-12 | 248 | 298 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-12 | 249 | 296 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-18 | 250 | 302 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.48E-8 | 251 | 296 | No hit | No description |
PROSITE profile | PS51294 | 23.241 | 297 | 351 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-12 | 301 | 349 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-11 | 302 | 345 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-22 | 303 | 350 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.06E-9 | 306 | 345 | No hit | No description |
SuperFamily | SSF53756 | 5.83E-32 | 633 | 876 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 880 aa Download sequence Send to blast |
MGRVPGCAAS SGRVEAAKAR RRGQRWRRRP AAMAVPCASL EGGGRGRTMT VTRSWMDAWT 60 AVHSLLARLT LVINLASDKN PLFLPPTNKT WPQRNIAGPH SSSIGIHSTF HKPSRAPPRP 120 DRGGPPNRFR AKGHRATAPA VTCDLGEQSF PFSPTGQGRG PQAIVHKQRA CVGSNAHVRD 180 NACRCRCRRR RRVAYITIGA EQSTRRVDRS LGLCSASAPF DDHAASATRA SVRSMEARTR 240 GGEAAAVRKG PWTLEEDLVL VSYISENGEG AWDNLARAAG LNRNGKSCRL RWLNYLRPGV 300 RRGSITEAED AVIRELQSTI GNKWSKIAKH LPGRTDNEIK NYWRTRIQRK RPPAMTMGAG 360 AVSEGASSSS GWASPDSSDA GAGARDCWLF MQPKTEPQAC LATGVIKSEG ASSALASRDS 420 SNASDDWYTQ ASHPAYHSSS GLGLAADHLG TVGVDAATAA QFFSSTSEFA DGFWNALNNF 480 WETVPWTNDR LRFPKRVPSP LSAPCPLSNL SHHHRPHMQD TKRLGGPLAE LFATRPISCF 540 VVVTFSIFFE RGCHLFYPSL GSVDRLRRSN ACVVAGCGNG APGVSGAALE VGSGARGEAS 600 PSRRCSIDLS VSTSGKRLKS GEAMVIKNEH GPVHILFFPF LAPGHLIPIA DMAALFAARG 660 VKCTILTTPA NAVIIRSAVD RANDGFRGSD APAIDIAVVP FPDVGLPPGT ESASAVNSPA 720 GRDKFFQGIQ LLCEPFNQFL AENPQDAVVS DSFFDWSADA AAAHGVPRLA FFGSSMFAQA 780 CTDNMLRNNP LESAPENPDA LVALSGLPHR VELLRSQMLD PKKRQWHWDY FQRMNAADQR 840 SYGELFNSFH ELEPEFLKYY ATTLGRRVWL VGPCYLIVTW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-25 | 249 | 350 | 7 | 107 | B-MYB |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728193 | 1e-120 | KJ728193.1 Zea mays clone pUT6467 MYB transcription factor (MYB53) mRNA, partial cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP67564 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01530.1 | 2e-50 | myb domain protein 57 |