PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00133.1.g00850.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 880aa    MW: 95468 Da    PI: 9.9808
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00133.1.g00850.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.5e-14249296148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT eEd+ lv ++ + G g W+  ar  g++R +k+c++rw++yl
  Zjn_sc00133.1.g00850.1.am.mk 249 KGPWTLEEDLVLVSYISENGEGAWDNLARAAGLNRNGKSCRLRWLNYL 296
                                   79********************************************97 PP

2Myb_DNA-binding39.81e-12302345146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg+ T+ Ed  + ++    G++ W++Ia++++ gRt++++k++w++
  Zjn_sc00133.1.g00850.1.am.mk 302 RGSITEAEDAVIRELQSTIGNK-WSKIAKHLP-GRTDNEIKNYWRT 345
                                   7889******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.609244296IPR017930Myb domain
SuperFamilySSF466898.59E-28247343IPR009057Homeodomain-like
SMARTSM007177.7E-12248298IPR001005SANT/Myb domain
PfamPF002495.6E-12249296IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-18250302IPR009057Homeodomain-like
CDDcd001672.48E-8251296No hitNo description
PROSITE profilePS5129423.241297351IPR017930Myb domain
SMARTSM007172.1E-12301349IPR001005SANT/Myb domain
PfamPF002493.3E-11302345IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-22303350IPR009057Homeodomain-like
CDDcd001672.06E-9306345No hitNo description
SuperFamilySSF537565.83E-32633876No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 880 aa     Download sequence    Send to blast
MGRVPGCAAS SGRVEAAKAR RRGQRWRRRP AAMAVPCASL EGGGRGRTMT VTRSWMDAWT  60
AVHSLLARLT LVINLASDKN PLFLPPTNKT WPQRNIAGPH SSSIGIHSTF HKPSRAPPRP  120
DRGGPPNRFR AKGHRATAPA VTCDLGEQSF PFSPTGQGRG PQAIVHKQRA CVGSNAHVRD  180
NACRCRCRRR RRVAYITIGA EQSTRRVDRS LGLCSASAPF DDHAASATRA SVRSMEARTR  240
GGEAAAVRKG PWTLEEDLVL VSYISENGEG AWDNLARAAG LNRNGKSCRL RWLNYLRPGV  300
RRGSITEAED AVIRELQSTI GNKWSKIAKH LPGRTDNEIK NYWRTRIQRK RPPAMTMGAG  360
AVSEGASSSS GWASPDSSDA GAGARDCWLF MQPKTEPQAC LATGVIKSEG ASSALASRDS  420
SNASDDWYTQ ASHPAYHSSS GLGLAADHLG TVGVDAATAA QFFSSTSEFA DGFWNALNNF  480
WETVPWTNDR LRFPKRVPSP LSAPCPLSNL SHHHRPHMQD TKRLGGPLAE LFATRPISCF  540
VVVTFSIFFE RGCHLFYPSL GSVDRLRRSN ACVVAGCGNG APGVSGAALE VGSGARGEAS  600
PSRRCSIDLS VSTSGKRLKS GEAMVIKNEH GPVHILFFPF LAPGHLIPIA DMAALFAARG  660
VKCTILTTPA NAVIIRSAVD RANDGFRGSD APAIDIAVVP FPDVGLPPGT ESASAVNSPA  720
GRDKFFQGIQ LLCEPFNQFL AENPQDAVVS DSFFDWSADA AAAHGVPRLA FFGSSMFAQA  780
CTDNMLRNNP LESAPENPDA LVALSGLPHR VELLRSQMLD PKKRQWHWDY FQRMNAADQR  840
SYGELFNSFH ELEPEFLKYY ATTLGRRVWL VGPCYLIVTW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-252493507107B-MYB
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7281931e-120KJ728193.1 Zea mays clone pUT6467 MYB transcription factor (MYB53) mRNA, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6756422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01530.12e-50myb domain protein 57