PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00133.1.g00770.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 234aa MW: 26176.9 Da PI: 7.1708 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.4 | 3.9e-09 | 154 | 202 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 + W+ d+l+ +a + + ++ +W+ +ar +g +++ ++++ ++qk+ Zjn_sc00133.1.g00770.1.am.mk 154 QEWSRSQDKLFERALAVYDTDtpdRWHNVARFIGGTKSVEEVRRHYQKL 202 78*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.423 | 148 | 203 | IPR017877 | Myb-like domain |
SMART | SM00717 | 7.1E-10 | 152 | 205 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.63E-11 | 154 | 210 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.8E-7 | 154 | 202 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.59E-7 | 155 | 202 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MSINHLEEPN SVPDVPGAFQ LSHSRAGRLS PLSSEDTDLS RANFSADQSP SWPWHRSAST 60 DGQEAASKPF QGIPICHISR PEKEPSVFLL FRTLSLGDSK SNPNEPDLSF KAPFPTNHPS 120 HRHAHTSEED QSTLPVPHCP LIRNRTMASN TKSQEWSRSQ DKLFERALAV YDTDTPDRWH 180 NVARFIGGTK SVEEVRRHYQ KLEEDVARIE SGGAPFHWYA AAAPPPARTV QRGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-18 | 147 | 216 | 1 | 70 | RADIALIS |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP47067 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 5e-26 | RAD-like 6 |