PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00131.1.g00610.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family CO-like
Protein Properties Length: 637aa    MW: 69416.9 Da    PI: 6.7093
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00131.1.g00610.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61e-07215256338
                      zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                                   +r C+ + + +++++C  ++ +lC+ C ++ H+       H+
  Zjn_sc00131.1.g00610.1.am.mk 215 ARACDGCLRRRARWYCAADDAFLCQGCDTSVHSAnplarrHE 256
                                   578*****************************6567777776 PP
2CCT67.14.9e-23582625144
                           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                   Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Zjn_sc00131.1.g00610.1.am.mk 582 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 625
                                   9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.2E-11213260IPR000315B-box-type zinc finger
PROSITE profilePS5011910.48213260IPR000315B-box-type zinc finger
CDDcd000211.32E-8216260No hitNo description
PfamPF006432.1E-6216257IPR000315B-box-type zinc finger
PROSITE profilePS5101716.083582624IPR010402CCT domain
PfamPF062031.2E-17582624IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MAHGARLNLA DEPIDSKQQG WEHADHAPFS LVLDHAGSGP RPRVPVYRYG IVASNYACAP  60
IDGDPGSVTR AVVLLHKRRD CFRAHARQLP APSHHQFAHT AAAIIMSFIV DKTTTTMDGR  120
EPQWRNERKF LVLSGRTKAA HSNRDRGRER RRKGSGCRLA QWSGPPEIPS QPMAGALAGW  180
SVQETSPASK IVALRRQEMI TTSSSAMAAV GSKAARACDG CLRRRARWYC AADDAFLCQG  240
CDTSVHSANP LARRHERLRL QQSSSPMQSP PAAGGAAKQC ERRDEVVPAW FRRKARTPRG  300
GHAVAKRLIV PEAAGGGNSS EGRSCVGEVE AEEEEEQLLY RVPVFDPALA EFCLPPPLED  360
TAAAASSCCN ADGDVVNSTK PDAAPPPQPP TTTQFFPDGC AGFEPTDAEL REFAADMEAL  420
LGRGLDDGNE EDPFYMETLG LLDPVVDDGA KVKVENEVGG AYEAIDELAC RLDVEPEASD  480
EMLDIDFDYG SPQETPEEKA ASSDGTGSDA KFLQRSFSLT LNYEAIIESW ESSPWTGGGC  540
RPHVKLDDCW PHDYSGMWVM GGVVGHGGEE LSLPRLGMDG GREARVSRYR EKRRTRLFSK  600
KIRYEVRKLN AEKRPRMKGR FVKRATAGGS VAIAGLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1592608RRTRLFSKKIRYEVRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965182.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A0A9S1W60.0A0A0A9S1W6_ARUDO; Uncharacterized protein
STRINGSi006432m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-69B-box type zinc finger protein with CCT domain