PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00129.1.g00610.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TALE

Protein Properties

Length: 298aa MW: 32450.5 Da PI: 5.1335

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00129.1.g00610.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	24.6	4.4e-08	226	260	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 + +yp++e++ +L + +gL+ +q+ +WF N+R ++ Zjn_sc00129.1.g00610.1.am.mkhc 226 RWPYPTEEDKVRLVAMTGLDPKQINNWFINQRKRH 260 469*****************************885 PP
2	ELK	34.2	5.4e-12	180	201	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsg+L+ L++EF+ Zjn_sc00129.1.g00610.1.am.mkhc 180 ELKDMLLKKYSGCLSRLRSEFL 201 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	9.6E-19	41	85	IPR005540	KNOX1
Pfam	PF03790	2.1E-19	43	83	IPR005540	KNOX1
SMART	SM01256	3.0E-22	91	142	IPR005541	KNOX2
Pfam	PF03791	4.5E-21	96	141	IPR005541	KNOX2
Pfam	PF03789	6.1E-9	180	201	IPR005539	ELK domain
PROSITE profile	PS51213	10.441	180	200	IPR005539	ELK domain
SMART	SM01188	2.0E-6	180	201	IPR005539	ELK domain
PROSITE profile	PS50071	12.195	200	263	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-19	202	271	IPR009057	Homeodomain-like
SMART	SM00389	2.2E-13	202	267	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.9E-26	205	265	IPR009057	Homeodomain-like
CDD	cd00086	3.53E-12	212	264	No hit	No description
Pfam	PF05920	6.7E-17	220	259	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	238	261	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MEDLYSIHPG ISRAGAGAAS EALSGIAGGG GSPPPPADLT ELVKAQIGGH PRYPTLLAAY 60 IECRKVGAPP EVAALLEEIG RERGAARSAA GEVGLGLDPE LDEFMEAYCR VLERYREELS 120 QSFDEAASFL SSVRTQLSTL CGADASLSDE MVGSSEDEPC SGDTDLDLGQ EHSSRLADHE 180 LKDMLLKKYS GCLSRLRSEF LKKRKKGKLP KDARSALMDW WKTHYRWPYP TEEDKVRLVA 240 MTGLDPKQIN NWFINQRKRH WKPSEDMRFA LVDGVAGGGA PSSGTTTTLY FDTGTIGP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	195	204	LRSEFLKKRK
2	201	205	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269\|PubMed:10488233}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001105084.1	1e-158	liguleless 4
Swissprot	Q9FP29	1e-145	KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBL	A0A0A9BTH0	1e-164	A0A0A9BTH0_ARUDO; Uncharacterized protein
STRING	GRMZM2G094241_P01	1e-158	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1698	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.1	6e-73	KNOTTED1-like homeobox gene 6

Publications ? help Back to Top
Park SH, et al. A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice. Planta, 2007. 227(1): p. 1-12 [PMID:17624547]