PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00129.1.g00470.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 310aa    MW: 34199.3 Da    PI: 5.2567
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00129.1.g00470.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.71.5e-192471148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg+WT+eEd llv++++++G g+W++ ar  g++Rt+k+c++rw++yl
  Zjn_sc00129.1.g00470.1.sm.mk 24 RGPWTAEEDVLLVNYIAKHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 71
                                  89********************************************97 PP
2Myb_DNA-binding42.41.7e-1377121146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg  T+ E++l++++++++G++ W+ Iar++  gRt++++k++w++
  Zjn_sc00129.1.g00470.1.sm.mk  77 RGDITPAEQLLILELHARWGNR-WSEIARRLLPGRTDNEVKNYWRT 121
                                   6778******************.*******999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.5041975IPR017930Myb domain
SuperFamilySSF466893.44E-2922119IPR009057Homeodomain-like
SMARTSM007172.8E-162373IPR001005SANT/Myb domain
PfamPF002491.2E-172471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-222578IPR009057Homeodomain-like
CDDcd001671.86E-132671No hitNo description
SMARTSM007172.2E-1276125IPR001005SANT/Myb domain
PROSITE profilePS5129414.99376127IPR017930Myb domain
PfamPF002495.4E-1277121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2079125IPR009057Homeodomain-like
CDDcd001671.04E-981121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MVDQALAMSP AASVVSEDKG ELRRGPWTAE EDVLLVNYIA KHGEGRWNSL ARSAGLKRTG  60
KSCRLRWLNY LRPDVRRGDI TPAEQLLILE LHARWGNRWS EIARRLLPGR TDNEVKNYWR  120
TRVQRHAKRL RCDVSSRRFQ DVVRQVWVPR LVQRVQAESS SAATGGCRGG RDVVAPEATS  180
VMSAAAACQL MISAYSHPHY QQLDCCYTEP SQTTATAAGA MRPDDASSPP WSLLTTEESM  240
NQGGGVVQCS GATTGPVDGD DVAQEEEGVF GGSWSELLAT TGPDDGAMIG MRDFELGDFE  300
DNLWSLEDIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-262112524126MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806553.11e-107transcription factor MYB2-like
TrEMBLA0A1E5VIK11e-106A0A1E5VIK1_9POAL; Transcription factor MYB108
STRINGSi022474m1e-106(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.14e-76myb domain protein 112