PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00128.1.g01080.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 664aa MW: 73417.8 Da PI: 6.3732 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 363.2 | 3.6e-111 | 239 | 611 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 l++lL++cA+av+++d + a++lL++++++asp+gd +qRla++f+e+L+arla+++s +y++l +++ts + l+a+ Zjn_sc00128.1.g01080.1.am.mk 239 LRTLLIHCAQAVATDDRRSATELLKQIKQHASPQGDGTQRLAHCFAEGLQARLAGTGSMVYQSLMAKRTS---AVALLQAY 316 6789************************************************************999998...899***** PP GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160 +l+ + + k++++ N +I++a g++++Hi+D++i +G+QWp++l+ +++R++gpp++RiTg++ p++g +e++ee Zjn_sc00128.1.g01080.1.am.mk 317 QLYMAAICFKKVAFIFSNYTIYNASLGKKKIHIVDYGIRYGFQWPCFLRRISCREGGPPEVRITGIDLPQPGfrPTERIEE 397 ***********************************************************************9********* PP GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241 tg+rL ++A+e+gvpf++++++a+++e+++ e+L+++p+E+l+Vn+++q +l+desv +es+rd vL+ +++++P+ +++ Zjn_sc00128.1.g01080.1.am.mk 398 TGRRLGNYAREFGVPFKYHAIAASKMESIRKEDLNIDPDEVLIVNCMYQFRNLMDESVVIESPRDVVLNNIRKMQPHAFIH 478 ********************************************************************************* PP GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322 + + + +++ F++rf eal yysalfd l+++ pr+s++r+ +E+ ++gr + nv+aceg +r+er et+++W+ r ++a Zjn_sc00128.1.g01080.1.am.mk 479 AIVNGSFSAPFFVTRFREALFYYSALFDILDTTTPRNSDQRMLIEQNIFGRIALNVIACEGIDRVERPETYKQWQVRNQRA 559 ********************************************************************************* PP GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 G+k++pl++++++ +++ ++ ++ + + ++ ++++l++gWk+r L+++S W+ Zjn_sc00128.1.g01080.1.am.mk 560 GLKQLPLNQEIVQVVRSKVKDCYHKDFVIDVDHNWLLQGWKGRILYAISTWE 611 ***********************889*************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 62.954 | 213 | 591 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-108 | 239 | 611 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 664 aa Download sequence Send to blast |
MGSSSYDPSP AGAADPSLYF YLPDLVPGSP SSYLDLPPTP YHEQPPVSSD GGGGNGATGS 60 PEDLVLPYIS RMLMEDDIED KFFYDYPDNP VLLQAQQPFL DILSNSDDSS ATTGDKVAAR 120 SDGPFAPAPP PPSAASVKEE ELVNAAPGAG VSRGRKKPYD DDELEAESGR SSKQSAVQGG 180 DDATRDMLDR VMMPSPESCL QQMQQLRIAM QEEAAKNEAG GKAGNGKANG RGGRKVVDLR 240 TLLIHCAQAV ATDDRRSATE LLKQIKQHAS PQGDGTQRLA HCFAEGLQAR LAGTGSMVYQ 300 SLMAKRTSAV ALLQAYQLYM AAICFKKVAF IFSNYTIYNA SLGKKKIHIV DYGIRYGFQW 360 PCFLRRISCR EGGPPEVRIT GIDLPQPGFR PTERIEETGR RLGNYAREFG VPFKYHAIAA 420 SKMESIRKED LNIDPDEVLI VNCMYQFRNL MDESVVIESP RDVVLNNIRK MQPHAFIHAI 480 VNGSFSAPFF VTRFREALFY YSALFDILDT TTPRNSDQRM LIEQNIFGRI ALNVIACEGI 540 DRVERPETYK QWQVRNQRAG LKQLPLNQEI VQVVRSKVKD CYHKDFVIDV DHNWLLQGWK 600 GRILYAISTW EGPGKELQAA GRRRVASNRE EGELGAPRRR EGCEQQGGGR AESSGARSEC 660 APDG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 8e-45 | 243 | 610 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006664663.2 | 0.0 | PREDICTED: scarecrow-like protein 9, partial | ||||
Refseq | XP_015620149.1 | 0.0 | scarecrow-like protein 34 | ||||
Swissprot | O80933 | 1e-166 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A287QL73 | 0.0 | A0A287QL73_HORVV; Uncharacterized protein | ||||
STRING | OBART12G16530.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-156 | GRAS family protein |