PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00128.1.g01020.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 382aa    MW: 43750.9 Da    PI: 9.9652
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00128.1.g01020.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.3e-142675148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                                  r+rW +eEd  l  +v+q+G++ W++++++m+  + R +k+c +rw +yl
  Zjn_sc00128.1.g01020.1.sm.mk 26 RQRWRPEEDAVLRAYVRQYGPREWHLVSQRMNvaLDRDAKSCLERWKNYL 75
                                  89**********************************************97 PP
2Myb_DNA-binding36.31.3e-1181125147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +g+ T+eE+ l +++ +++G++ Wk+Ia++++ gRt+k +  +w  +
  Zjn_sc00128.1.g01020.1.sm.mk  81 KGSLTEEEQRLVIRLQAKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 125
                                   6788******************.*********.*****999999766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.6492175IPR017930Myb domain
SMARTSM007171.3E-112577IPR001005SANT/Myb domain
SuperFamilySSF466893.09E-2126120IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-202882IPR009057Homeodomain-like
CDDcd001671.81E-72875No hitNo description
PfamPF139215.3E-132989No hitNo description
PROSITE profilePS5129423.37576130IPR017930Myb domain
SMARTSM007172.8E-1080128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-1583124IPR009057Homeodomain-like
CDDcd001675.09E-785126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MATLLQKQDK LREEQDGRWP VQMKERQRWR PEEDAVLRAY VRQYGPREWH LVSQRMNVAL  60
DRDAKSCLER WKNYLRPGIK KGSLTEEEQR LVIRLQAKHG NKWKKIAAEV PGRTAKRLGK  120
WWEVFKEKQQ RELRDSRRPP PEPSPDERGR YEWLLENFAE KLVNERQTAP LLMAAPGLPP  180
WLSSNAGPAA ITQPPSPSVT LSLASAAVAA PSPSAVPHGA PWMPPERAAA EAFGFASPQA  240
LPGGAPPNPG MAVVEGQALA ELVECCRELE EGQRAWAAHR REAAWRLKRV EQQLEAEREM  300
RRREMWDEFE AKMRAMRVEQ AAAAERVERE YREKAAELRR DAQAKEEKMA EQWAAKHARV  360
AKFLEQVGGC HPPRPWSSAE MN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-1529123798MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-1529123798C-Myb DNA-Binding Domain
1msf_C6e-1529123798C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1264890.0AF126489.1 Zea mays rough sheath2 protein (rs2) gene, complete cds.
GenBankAF1434470.0AF143447.1 Zea mays rough sheath 2 (rs2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105509.11e-165protein rough sheath 2
SwissprotQ9S7B21e-166RS2_MAIZE; Protein rough sheath 2
TrEMBLA0A3L6RDW81e-167A0A3L6RDW8_PANMI; Protein rough sheath 2
STRINGGRMZM2G403620_P011e-164(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51903654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.11e-88MYB family protein