PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00128.1.g00870.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Dof | ||||||||
Protein Properties | Length: 323aa MW: 33791.8 Da PI: 8.4912 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.4 | 6.5e-38 | 103 | 160 | 5 | 62 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +l+cprCds+ntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+ Zjn_sc00128.1.g00870.1.am.mk 103 TLRCPRCDSANTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRA 160 679**************************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-31 | 85 | 158 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.273 | 104 | 158 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.4E-31 | 104 | 158 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 106 | 142 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MAFSLPILLD PPSWDQMQMQ QQRSLQCLLG GGSDHHQLMP SPAGLAPLPD GPPDTAARAP 60 AGGVSSTSLQ QQATAETAQQ SRQGVSMAER ARLARVPLPE PGTLRCPRCD SANTKFCYFN 120 NYSLSQPRHF CKACRRYWTR GGALRNVPVG GGCRRNTKRA SKKASRQGAA GGATAASSSS 180 STTTTSTTVT TTTTSSAAAA EVLASMHAQL PHLGLPPAAA LEASLEGYHH YLPLQMQQQF 240 LQQGLDGYHF TDGDGGGVFA DGLPRGVASG LLAQLAAVKM EGHNNGGAVA AAHEQSYWPG 300 SGGNEWPTEF LSGFSLSSSG NVL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00281 | DAP | Transfer from AT2G28810 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC582419 | 1e-145 | KC582419.1 Sorghum bicolor dof28 protein (dof28) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008668091.1 | 1e-124 | dof zinc finger protein DOF2.2 isoform X1 | ||||
TrEMBL | A0A317Y8M1 | 1e-132 | A0A317Y8M1_MAIZE; Dof zinc finger protein DOF5.1 | ||||
TrEMBL | B6U2U9 | 1e-132 | B6U2U9_MAIZE; Uncharacterized protein | ||||
STRING | Pavir.Ca02598.1.p | 1e-123 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02460.1 | 3e-39 | Dof family protein |