PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00128.1.g00740.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 218aa    MW: 25327.7 Da    PI: 8.2146
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00128.1.g00740.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.4e-183077148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    +g+WT++Ed++lv+ v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
  Zjn_sc00128.1.g00740.1.am.mkhc 30 KGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYL 77
                                    79********************************************97 PP
2Myb_DNA-binding56.18.8e-1883128148
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                     rgr+T+ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
  Zjn_sc00128.1.g00740.1.am.mkhc  83 RGRMTPHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 128
                                     89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.2592577IPR017930Myb domain
SuperFamilySSF466891.62E-2929124IPR009057Homeodomain-like
SMARTSM007171.9E-152979IPR001005SANT/Myb domain
PfamPF002491.4E-163077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-203184IPR009057Homeodomain-like
CDDcd001673.03E-113277No hitNo description
PROSITE profilePS5129425.99478132IPR017930Myb domain
SMARTSM007171.1E-1682130IPR001005SANT/Myb domain
PfamPF002491.8E-1583127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2485131IPR009057Homeodomain-like
CDDcd001677.52E-1285128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
HAEEEEQEDR LLADTRVYVA MVTVREETRK GPWTEQEDLQ LVCTVRLFGE RRWDFIAKVS  60
GLNRTGKSCR LRWVNYLHPG LKRGRMTPHE ERLILELHAR WGNRWSRIAR RLPGRTDNEI  120
KNYWRTHMRK KAQERKRNMS PSSSSSSLTY QSCYPDTPPI IGAEGQELHG GSGCITSILK  180
GTPPDMEVYP LDQFWLEMDD EIKMAQQFGY GEGAGPCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-28271321105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-28301324105C-Myb DNA-Binding Domain
1msf_C2e-28301324105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF7566681e-171JF756668.1 Saccharum hybrid cultivar Co 740 MYB transcription factor MYB14 (MYB14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962720.11e-125myb-related protein MYBAS2
SwissprotQ4JL761e-109MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLK3Z9831e-123K3Z983_SETIT; Uncharacterized protein
STRINGSi023104m1e-124(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.33e-72myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]