PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00128.1.g00580.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 201aa MW: 22639.9 Da PI: 6.0176 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.9 | 2.7e-09 | 3 | 25 | 23 | 46 |
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 +W++Ia++++ gRt++++k++w++ Zjn_sc00128.1.g00580.1.sm.mk 3 RWSRIAQHLP-GRTDNEIKNYWRT 25 4*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.55 | 1 | 31 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.52E-7 | 3 | 33 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.15E-7 | 3 | 25 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-11 | 3 | 26 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.6E-7 | 3 | 25 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MYRWSRIAQH LPGRTDNEIK NYWRTRVQKH AKQLNCDANS QRFKDAMRYL WTPRLVDSHR 60 FLNTNAAGSD HQDDGYYLTA ALSGVGVTYP SSDSLVTTTS EPHDASFPAR KWGELYSYAD 120 VRAGEETMAV SSGDWCAARE TSQQQAPGMM RAGEQKAAQA VRGAGARFED PELSGWVQSF 180 SEVVDATESS FWTLDDVWKT Q |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069744 | 2e-58 | BT069744.1 Zea mays full-length cDNA clone ZM_BFb0226N11 mRNA, complete cds. | |||
GenBank | KJ727638 | 2e-58 | KJ727638.1 Zea mays clone pUT5565 MYB transcription factor (MYB100) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004962755.1 | 6e-49 | transcription factor JAMYB | ||||
TrEMBL | K3Z8G1 | 1e-47 | K3Z8G1_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Cb00499.1.p | 2e-48 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 9e-30 | myb domain protein 78 |