PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00127.1.g00260.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 332aa MW: 35122.4 Da PI: 9.3702

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00127.1.g00260.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00041	227	247	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cg+ F ++ L H++ H Zjn_sc00127.1.g00260.1.am.mk 227 CTYCGRKFYSSQALGGHQNAH 247 *****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.18E-7	215	269	No hit	No description
PROSITE profile	PS50157	11.78	225	252	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	227	247	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MLGAAAAATK AAHHESGAFD RAKAGYMQDR AAIVVVQMQA LRQRIWIATC ARASGAAGAG 60 AFPDNQDHQL AAQSDKLGTH KIASLRSIDI LKNLQNRWVD ERGPYRPQPS GRPEESAKGH 120 PAQVVMRTIW ARPRRTATAR SPAGQHVDDD DDGAASARYA TAGPTNGGRP LTSPNGAAAG 180 DDPTRQFQSA SEIIIIVVAA LMEVDLELSL LHPAAAPEQE PTGFFLCTYC GRKFYSSQAL 240 GGHQNAHKYE RTLAKRRMEI ALAMRAHGAA PGASSRSRAD AGVAGGAEEQ PGRARMGAKQ 300 ADAAISGLLL GKSSSSEYGV ERADELDLSL RL

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	1e-14	zinc finger protein 4