PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00125.1.g00070.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 386aa MW: 42642 Da PI: 7.1483

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00125.1.g00070.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.4	2.5e-16	51	110	1	46
TSSS-HHHHHHHHHHHHHTTTT...............-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...............tWktIartmgkgRtlkqcksrwqk 46 +g+W++eEd +l++ ++++G+g +W+ Ia ++ gRt++++k++w++ Zjn_sc00125.1.g00070.1.am.mk 51 KGPWSPEEDAKLKEFIEKHGTGgnwialpqkaaciyfRWSIIAPQLP-GRTDNDIKNYWNT 110 79*******************************************.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.8E-23	42	116	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.73E-13	45	118	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.203	46	116	IPR017930	Myb domain
SMART	SM00717	1.2E-14	50	114	IPR001005	SANT/Myb domain
Pfam	PF00249	7.6E-15	51	110	IPR001005	SANT/Myb domain
CDD	cd00167	6.28E-13	53	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MCMEGPVLSA VGLLDRSVGP LSKAPAIAGG VLTSWYLNIT APCCDKNNVK KGPWSPEEDA 60 KLKEFIEKHG TGGNWIALPQ KAACIYFRWS IIAPQLPGRT DNDIKNYWNT KLKKKLLGSS 120 TVTAPPHRTP RHHDRPLHLM LQHSSSSFTH PTYSGFFPHA TASLYDPIVP ALTLPPTEDF 180 MLGSSLAIPN ASSLLHAHGA MQQQLHHHVV KEESGSMIVF GSDQQSCSSS DGRAHSRSQF 240 SHGKELRFNG YYGYNNNGSI EHDHRSLLQL QEHHQHAHQV PVEYNYDELK QLLMCSTTGS 300 NLHGSSQVRD GGMEGFGSQG KVTMLTAISA CEDIYLSRWS ETSCMEAKQD DHRGSAHGIE 360 ILDAKIRAPE MNRSESEEKI PGVCRE

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MCMEGPVLSA VGLLDRSVGP LSKAPAIAGG VLTSWYLNIT APCCDKNNVK KGPWSPEEDA  60
KLKEFIEKHG TGGNWIALPQ KAACIYFRWS IIAPQLPGRT DNDIKNYWNT KLKKKLLGSS  120
TVTAPPHRTP RHHDRPLHLM LQHSSSSFTH PTYSGFFPHA TASLYDPIVP ALTLPPTEDF  180
MLGSSLAIPN ASSLLHAHGA MQQQLHHHVV KEESGSMIVF GSDQQSCSSS DGRAHSRSQF  240
SHGKELRFNG YYGYNNNGSI EHDHRSLLQL QEHHQHAHQV PVEYNYDELK QLLMCSTTGS  300
NLHGSSQVRD GGMEGFGSQG KVTMLTAISA CEDIYLSRWS ETSCMEAKQD DHRGSAHGIE  360
ILDAKIRAPE MNRSESEEKI PGVCRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004975125.1	1e-133	transcription factor RAX2
TrEMBL	A0A3L6Q925	1e-138	A0A3L6Q925_PANMI; Transcription factor RAX2-like
STRING	Si010627m	1e-132	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP135	38	412

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	3e-30	myb domain protein 36