PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00122.1.g01250.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 23961.7 Da PI: 10.4187 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.2 | 5.6e-20 | 16 | 66 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d +r r +lg+f+taeeAa+a+++a+++l+ge Zjn_sc00122.1.g01250.1.sm.mk 16 RFVGVRQRP-SGRWVAEIKD----SaQRVRLWLGTFDTAEEAARAYDEAARALRGE 66 589******.7*********....4456**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.16E-29 | 16 | 74 | No hit | No description |
Pfam | PF00847 | 9.5E-15 | 16 | 66 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.508 | 16 | 73 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-33 | 16 | 79 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-28 | 16 | 74 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-20 | 17 | 74 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.0E-8 | 17 | 28 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-8 | 39 | 55 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MAAQESGRTA ASRARRFVGV RQRPSGRWVA EIKDSAQRVR LWLGTFDTAE EAARAYDEAA 60 RALRGENTRT NFADRGRHGG SAASRARLSK NLQHVIARAA AAGRATACAG VGDQFALAAV 120 FRHNWLQPNN TPHTPQQQQQ CDAETAPHVK SAVQPSFVVP RRTEAPQPPS QTAAVPVGDI 180 VDGDVSVEMG VQERSFKVSS SVITPPTFSA SSPEPFVLED FF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-15 | 5 | 72 | 3 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ810282 | 1e-63 | DQ810282.1 Oryza brachyantha BAC 0002C07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010239429.1 | 5e-74 | dehydration-responsive element-binding protein 1C | ||||
TrEMBL | A0A3B6LP97 | 1e-73 | A0A3B6LP97_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446UGS5 | 1e-73 | A0A446UGS5_TRITD; Uncharacterized protein | ||||
STRING | GRMZM2G018138_P01 | 6e-68 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12429 | 26 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 4e-19 | related to AP2 11 |