PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00122.1.g00690.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | SRS | ||||||||
Protein Properties | Length: 324aa MW: 33125.8 Da PI: 8.6567 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 215.4 | 1.3e-66 | 96 | 244 | 4 | 152 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskk 82 g++sCqdCGnqakkdCah+RCRtCCksrgf+C thvkstWvpaakrrerqqqlaa++++aaa++a a + r+ +++ ++ Zjn_sc00122.1.g00690.1.am.mkhc 96 GGVSCQDCGNQAKKDCAHQRCRTCCKSRGFSCPTHVKSTWVPAAKRRERQQQLAALAASAAATTAGAGTSRDVTKRPRA 174 6789*******************************************************99999999999998889999 PP DUF702 83 qsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152 + ++++ ++ss+++++ + ++++P+evsse vfrcvr++ vd++++e+aYqt+vsigGhvfkGiL+d G+ Zjn_sc00122.1.g00690.1.am.mkhc 175 RLTVATPTTSSGDQQMVTVAERFPREVSSETVFRCVRLGPVDQADAEVAYQTSVSIGGHVFKGILQDVGP 244 99*******************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 8.2E-63 | 97 | 244 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 7.6E-27 | 99 | 141 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 9.2E-20 | 196 | 244 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MAGFPLGGGG HHSRDEPAPS VPQVHPSDAA SFLYAARAGG GLQLWQQHEH QHPFYASNVI 60 RFSSDDSPGA APLLTGAAAS SSSSRGARGS GGAVGGGVSC QDCGNQAKKD CAHQRCRTCC 120 KSRGFSCPTH VKSTWVPAAK RRERQQQLAA LAASAAATTA GAGTSRDVTK RPRARLTVAT 180 PTTSSGDQQM VTVAERFPRE VSSETVFRCV RLGPVDQADA EVAYQTSVSI GGHVFKGILQ 240 DVGPTCLASV GGSGSGPAIE YHHFRHAGDG SPPSTTPAGE AGGGGGVAGN IIVSSAVVMD 300 PYPTPGPYGA FPAGMSFFHG HPRP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021308557.1 | 1e-138 | protein SHI RELATED SEQUENCE 1-like | ||||
TrEMBL | A0A1B6QDR9 | 1e-136 | A0A1B6QDR9_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G080295_P01 | 1e-136 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1354 | 35 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 6e-48 | Lateral root primordium (LRP) protein-related |