PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00121.1.g00310.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 267aa    MW: 27938.2 Da    PI: 7.6379
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00121.1.g00310.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000187109123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC++C + F ++  L  H++ H
  Zjn_sc00121.1.g00310.1.am.mk  87 FKCNYCQRKFYTSQALGGHQNAH 109
                                   89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.56E-783114No hitNo description
Gene3DG3DSA:3.30.160.608.0E-485113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.57287114IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGKGSSSRTE SMEVEAVAQV EDGEEVRGME QAPSQELDLL GSLGSEPMVN AMQPAEEKGK  60
EKARVEEEEK PAMATIAGGG GQKKRAFKCN YCQRKFYTSQ ALGGHQNAHK RERSLAKRGA  120
AGAAAAAAAA AGRGIYGAGD PFMPPHHLRF PHVWPYSAGG RPSFLGLGRG SYGVHQGWMA  180
QGGQPSVPGL ACNAGADRAS VYAPHAYSYT AASRSTTAGP TILDSGMAGL RWASVVSCAA  240
TVGDHNIAHE AKQQEEAEGT LDLNLKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703066e-41HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822315.14e-84zinc finger protein GIS3-like
TrEMBLA0A3L6RLA43e-83A0A3L6RLA4_PANMI; Uncharacterized protein
STRINGSi014969m7e-81(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130642230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.14e-15zinc finger protein 4