PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00121.1.g00020.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HB-other | ||||||||
Protein Properties | Length: 379aa MW: 41191.4 Da PI: 6.1864 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.6 | 9e-08 | 282 | 315 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Zjn_sc00121.1.g00020.1.sm.mkhc 282 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 315 469*****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 6.8E-19 | 97 | 141 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.5E-17 | 100 | 140 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.5E-26 | 150 | 207 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.5E-18 | 159 | 206 | IPR005541 | KNOX2 |
PROSITE profile | PS50071 | 11.92 | 256 | 319 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-10 | 258 | 323 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.69E-13 | 259 | 320 | No hit | No description |
SuperFamily | SSF46689 | 7.7E-16 | 259 | 323 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.1E-25 | 263 | 320 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.0E-17 | 276 | 315 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MAFHGHLPHE MSMPHLGTDD AAVAAAAAVA AGGGAPPAWM RYGDGSFLHL QTTSDSSAPS 60 PSAAAVQWNM GAAGEDAVAA MTGGCVVGAQ SAEADAAKSK AEILAHPLYE QLLSAHVACL 120 RIATPVDQLP RIDAQLAQSQ DVVAKYSGLA APAAAGDDGR ELDQFMTHYV LLLCSFKEQL 180 QQHVRVHAME AVMACWELEQ NLQSLTGASP GEGTGATMSD AEDDQADSEA NMYDPSLDGP 240 ADSMGFGLPT ESERSLMERR RAGKLPGDTT STLKAWWQSH SKWPYPTEED KARLVQETGL 300 QLKQINNWFI NQRKRNWHSN PSSSSNVKTK RKRYRINLVL LWYILKFHWS IDVLLNLSKK 360 AMQVNAVAFT IFDRAYAKL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 312 | 332 | RKRNWHSNPSSSSNVKTKRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Isoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003918 | 9e-84 | AP003918.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1705_A03. | |||
GenBank | AP005390 | 9e-84 | AP005390.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0075O18. | |||
GenBank | AP014964 | 9e-84 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | D49704 | 9e-84 | D49704.2 Oryza sativa Japonica Group OSH45 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683141.1 | 1e-176 | homeobox protein knotted-1-like 13 isoform X2 | ||||
Swissprot | Q0J6N4 | 1e-170 | KNOSD_ORYSJ; Homeobox protein knotted-1-like 13 | ||||
TrEMBL | A0A368RKB0 | 1e-175 | A0A368RKB0_SETIT; Uncharacterized protein | ||||
STRING | OPUNC08G08730.1 | 1e-172 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP564 | 38 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 1e-124 | KNOTTED1-like homeobox gene 3 |