PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00117.1.g00500.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 940aa MW: 106452 Da PI: 5.1064 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.2 | 9.4e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Zjn_sc00117.1.g00500.1.sm.mkhc 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.9 | 1.5e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Zjn_sc00117.1.g00500.1.sm.mkhc 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.77E-12 | 10 | 53 | No hit | No description |
Pfam | PF13921 | 4.3E-13 | 10 | 70 | No hit | No description |
SuperFamily | SSF46689 | 6.11E-21 | 33 | 108 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 2.10E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 2.4E-58 | 406 | 657 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 940 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPNDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDTRKR NRKRKGIDYN AEIPFEKRPP PGFYDTFGED KPPEHVQFPT 240 TIEDLEGKRR VDIETQLRKQ DIARNKILQR QDAPAAIMQA NKLNDPEAVT KRSKLMLPPP 300 QISDHELEEI AKMGSAGDPS LVEEIGEGST ATRALLSSYS QTPRLGMTPL RTPHRTPAGK 360 GDAIMMEAEN LARLRESQTP LLGGDNPDLH PSDFSGVTPR KREIQTPNPM ATPLASPGPG 420 ATPQIGMTPS RDGNSFGLTP KVTPFRDELR INEEVDMQDS AKLELRRQAE LRKSLRSGFS 480 SIPQPKNEYQ IVMPPITEDE KEEAEEKIEE DMSDRLARQR AEEQARQEAL LRKRSKVLQR 540 SLPRPPAASV EVLRQSLIKG GESRNRSTFV PPTLLEQADD LISEELLRLL EHDNAKYPLD 600 EKSQKEKKKG NKRQANGAMF VPEIEDFDEG ELKEASSMVE EEIQNLRVAM GHESESFEDF 660 VKAHDACQED LMYFPTNNSY GLASVAGNTD KITALQNEFE IVKKRMDDEA KKASRLEQKI 720 KLLTQGYQAR AGKLWSQVQD TYKQMDTAAT ELECFQELQK QEQMAATYRV RNLTEEVNKQ 780 KALERTLQSR YGDLLSSYQR IQEQLEERRT HLKIQEAVEA ENRAREVEAQ NHAAQEESEV 840 NFNVEEEKGQ TDSVTHEEPA GSKQINENQM DVDNSNADGE FVGPIPPAAE HAQEDNADAT 900 DGNLEYDKNK LPTVGAGING EAALSSDQAV TNEENGMVTE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGIDTRKRNRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823518.1 | 0.0 | cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A1E5UVC0 | 0.0 | A0A1E5UVC0_9POAL; Cell division cycle 5-like protein | ||||
STRING | Si009268m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4416 | 35 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Publications ? help Back to Top | |||
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