PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00116.1.g00290.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 179aa    MW: 18830.4 Da    PI: 8.5012
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00116.1.g00290.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-054163123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+C++C + F++   L  H+++H
  Zjn_sc00116.1.g00290.1.am.mk 41 YTCGYCRREFPSAQALGGHMNVH 63
                                  9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.77E-63968No hitNo description
PfamPF139127.8E-64163IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.8664168IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MERDHGRGLK QQPATAAWTP SNICLNPCFS WPVPPPSSSS YTCGYCRREF PSAQALGGHM  60
NVHQRDRARL RQCCSAFAPS PNLIAAHHYR WAAAAPRPPL PNLNLLPPHC TNAATAEPVV  120
YSFFSATVSA AAAPAARKAA VGVSLDLGIA VAGGVCNRGG GAAEVGGLDL ELRLGCSWE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9591932e-42EU959193.1 Zea mays clone 211832 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975075.22e-47transcriptional regulator SUPERMAN
TrEMBLA0A1E5W4I12e-54A0A1E5W4I1_9POAL; Uncharacterized protein
STRINGPavir.J31403.1.p2e-53(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.13e-14zinc finger protein 11