PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00113.1.g00470.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 452aa    MW: 48104.3 Da    PI: 8.2298
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00113.1.g00470.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.3e-1565112148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g W++eEde+lv +  + G g+W+ +ar  g+ R++k+c++rw +yl
  Zjn_sc00113.1.g00470.1.am.mk  65 KGLWSPEEDEKLVAYMLRSGQGSWSDVARNAGLQRCGKSCRLRWINYL 112
                                   678*******************************************97 PP
2Myb_DNA-binding521.6e-16118161146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg+++++E+el+v +++ lG++ W+ Ia++++ gRt++++k++w++
  Zjn_sc00113.1.g00470.1.am.mk 118 RGAFSPQEEELIVSLHAILGNR-WSQIAARLP-GRTDNEIKNFWNS 161
                                   89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.10460112IPR017930Myb domain
SuperFamilySSF466892.54E-2863159IPR009057Homeodomain-like
SMARTSM007178.7E-1164114IPR001005SANT/Myb domain
PfamPF002493.3E-1365112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2266119IPR009057Homeodomain-like
CDDcd001674.41E-968112No hitNo description
PROSITE profilePS5129425.339113167IPR017930Myb domain
SMARTSM007179.6E-16117165IPR001005SANT/Myb domain
PfamPF002496.8E-15118161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-25120168IPR009057Homeodomain-like
CDDcd001673.11E-11120160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
LSTSSSSTIR TSTSSTCTRA RPRDQSRRDR SKIELDRRAG DRSGSMRKPE CPTAAAVSGG  60
AKLRKGLWSP EEDEKLVAYM LRSGQGSWSD VARNAGLQRC GKSCRLRWIN YLRPDLKRGA  120
FSPQEEELIV SLHAILGNRW SQIAARLPGR TDNEIKNFWN STIKKRLKSS SSAASSPAPA  180
SDHCALSPDQ PSNTKLAGGR GGIDASSCPD LADLDRVDGG HHLHAVTSAS GLWMVDSSSS  240
ISSSTAARSY GYGHGGLLPL PDQLRGVAAD NTPPPFFHSH APPPFKHQAV SALHGGYYGG  300
SGHQHHGVAV EGCFGRGGEG LFGYVPPLLA EPAAMAAAQD QDRKPLMASS GNGNNPITGN  360
SSNNTTETTT TTTTLSNNES NITDNMNKDS SCLENSNVAA AAAVYWDGAH HQQLHMSSRN  420
VMQLQGGGGE CCWDLEELMK DLDPVLGCRK GA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28591691110B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00599PBMTransfer from AT5G12870Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0750941e-165KT075094.1 Panicum virgatum secondary wall-associated MYB domain-containing protein (MYB46A) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808414.11e-131myb-related protein 330-like
TrEMBLA0A1E5W8981e-140A0A1E5W898_9POAL; Transcription factor MYB46
STRINGPavir.Ca02370.1.p1e-134(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98213545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.17e-69myb domain protein 46