PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00111.1.g00800.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 498aa MW: 54229.2 Da PI: 7.915 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 247.3 | 6e-76 | 91 | 491 | 4 | 374 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgd.pmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 +l+c+ +++ g++ +a+a+L+ ls +s +gd ++qR++ f+e L +r ++ ++l+ +l+ + + + +++ + Zjn_sc00111.1.g00800.1.am.mk 91 IILQCVACLEMGNAVAASAALQYLSSVVSFAGDvALQRVVLAFAEVLGRRAMQLLPGLAWSLQLKVLLPPPTPAYINSAQW 171 689*****************************559***********************99998776665555555555555 PP GRAS 84 .fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetge 163 + ++P+++++ +aN+aI ea++ e+rvH++D++ ++ QW+aL++ +a+R++gpp lR+T v++ ++ l++ + Zjn_sc00111.1.g00800.1.am.mk 172 sLAMLFPLIRVAATAANNAIKEATAAERRVHVVDLGRANPNQWLALIRLFAARSGGPPFLRLTIVNE----DQSFLSQAAG 248 5******************************************************************....99******** PP GRAS 164 rLakfAeelgvpfefnvl..vakrledleleeLrvkp..gEalaVnlvlqlhrll.........................d 215 L++ A +l+vpf fn++ + +r++ ++ +L v + gEal++ + lq hrl Zjn_sc00111.1.g00800.1.am.mk 249 VLTQEAVRLHVPFVFNPVqdHIDRFTPASVAALGVAQgrGEALVITSTLQFHRLIadkvtedlpaesrnkkrknvdtttaT 329 *****************8666677777799999999999************************************988644 PP GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 s++++ + d++L+++ +l Pk++v++eq+a+hn++ + +r+ +a++yy +lf lea + + +r +vE++ll++e +n Zjn_sc00111.1.g00800.1.am.mk 330 TSHEIT-KADALLRVLCDLTPKLMVLTEQDANHNDQVLSNRVRNAFDYYEVLFRDLEAA-GGDPMTREFVEHMLLKEEMKN 408 444444.59***********************************************999.7888***************** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.....eesgslvlgWkdrpLvsvSa 372 +++cega rrerhe+le W r++ aGF+ +++s++a k++ +l ++ ++dg ++ ++g+l+l+ ++ ++++vSa Zjn_sc00111.1.g00800.1.am.mk 409 IISCEGALRRERHEKLEYWFPRMKVAGFELAAVSDDAFKDIASLAHQLSGDGIKWTlgahkIDKGCLLLYSRKISIFAVSA 489 ****************************************************999877665669***************** PP GRAS 373 Wr 374 W+ Zjn_sc00111.1.g00800.1.am.mk 490 WQ 491 *6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 37.329 | 62 | 466 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.1E-73 | 91 | 491 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MSSNQSRGNG KAVVAKEEDA EQEIWLVRKK VHHQGGGPSC AGEESSSLSA PAQPAANQGA 60 KAPVEAVPVP DANVPGPQPH GGNLSIFFYD IILQCVACLE MGNAVAASAA LQYLSSVVSF 120 AGDVALQRVV LAFAEVLGRR AMQLLPGLAW SLQLKVLLPP PTPAYINSAQ WSLAMLFPLI 180 RVAATAANNA IKEATAAERR VHVVDLGRAN PNQWLALIRL FAARSGGPPF LRLTIVNEDQ 240 SFLSQAAGVL TQEAVRLHVP FVFNPVQDHI DRFTPASVAA LGVAQGRGEA LVITSTLQFH 300 RLIADKVTED LPAESRNKKR KNVDTTTATT SHEITKADAL LRVLCDLTPK LMVLTEQDAN 360 HNDQVLSNRV RNAFDYYEVL FRDLEAAGGD PMTREFVEHM LLKEEMKNII SCEGALRRER 420 HEKLEYWFPR MKVAGFELAA VSDDAFKDIA SLAHQLSGDG IKWTLGAHKI DKGCLLLYSR 480 KISIFAVSAW QPAKKTSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-27 | 94 | 492 | 25 | 380 | Protein SCARECROW |
5b3h_A | 1e-27 | 94 | 492 | 24 | 379 | Protein SCARECROW |
5b3h_D | 1e-27 | 94 | 492 | 24 | 379 | Protein SCARECROW |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021303827.1 | 1e-118 | scarecrow-like protein 3 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13716 | 13 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 2e-56 | scarecrow-like 3 |