PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00110.1.g00830.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family CO-like
Protein Properties Length: 331aa    MW: 34321.2 Da    PI: 7.5316
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00110.1.g00830.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.34.8e-0661103542
                      zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                                    C+ ++   +  +C  +   lC  C  + H+       H++vpl
  Zjn_sc00110.1.g00830.1.am.mk  61 PCAVCGGA-AAVYCAADTAALCGPCDAAVHSAnplasrHERVPL 103
                                   6******9.*********************66999999999986 PP

2CCT69.11.2e-23238281144
                           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                   Rea+++RY+eKrk+RkF+K+irY+sRKa+Ae RpR+KGrFvk+a
  Zjn_sc00110.1.g00830.1.am.mk 238 REARVQRYREKRKNRKFQKTIRYASRKAYAEARPRIKGRFVKRA 281
                                   9*****************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.8E-1357103IPR000315B-box-type zinc finger
CDDcd000218.25E-761103No hitNo description
PROSITE profilePS501199.22962103IPR000315B-box-type zinc finger
PfamPF062036.3E-18238280IPR010402CCT domain
PROSITE profilePS5101716.638238280IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MPSSPFLFMQ LSSSVRSPTP THDEHLENQK KQSIRSWLTP RRRKPKAMGS EGSTSPGAGA  60
PCAVCGGAAA VYCAADTAAL CGPCDAAVHS ANPLASRHER VPLAAAAAAV AAASGVYDDL  120
FAADDVDAAS SWSLPPASGQ QGQGSPQGSS ETSFATSDSG ADGRSLFDLL SDVDLAACVT  180
GDAAGHLPYG FAPTHHHVAP FWAPPGLAAW TPAWSPAADA ATVVVPAATA VVAAAAEREA  240
RVQRYREKRK NRKFQKTIRY ASRKAYAEAR PRIKGRFVKR APGTAAAALD NGAVDAGGDE  300
AKFWLSFSDD ARDDGVGFYM DAGAYGVVPS F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13943PRRRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0683903e-68BT068390.1 Zea mays full-length cDNA clone ZM_BFb0159K08 mRNA, complete cds.
GenBankKJ7278883e-68KJ727888.1 Zea mays clone pUT5981 orphans transcription factor (Orphan319) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973094.11e-101zinc finger protein CONSTANS-LIKE 1
TrEMBLK3YJ051e-100K3YJ05_SETIT; Uncharacterized protein
STRINGSi014224m1e-101(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130662224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-16CONSTANS-like 5