PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00110.1.g00830.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | CO-like | ||||||||
Protein Properties | Length: 331aa MW: 34321.2 Da PI: 7.5316 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.3 | 4.8e-06 | 61 | 103 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ ++ + +C + lC C + H+ H++vpl Zjn_sc00110.1.g00830.1.am.mk 61 PCAVCGGA-AAVYCAADTAALCGPCDAAVHSAnplasrHERVPL 103 6******9.*********************66999999999986 PP | |||||||
2 | CCT | 69.1 | 1.2e-23 | 238 | 281 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKrk+RkF+K+irY+sRKa+Ae RpR+KGrFvk+a Zjn_sc00110.1.g00830.1.am.mk 238 REARVQRYREKRKNRKFQKTIRYASRKAYAEARPRIKGRFVKRA 281 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 9.8E-13 | 57 | 103 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.25E-7 | 61 | 103 | No hit | No description |
PROSITE profile | PS50119 | 9.229 | 62 | 103 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 6.3E-18 | 238 | 280 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.638 | 238 | 280 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MPSSPFLFMQ LSSSVRSPTP THDEHLENQK KQSIRSWLTP RRRKPKAMGS EGSTSPGAGA 60 PCAVCGGAAA VYCAADTAAL CGPCDAAVHS ANPLASRHER VPLAAAAAAV AAASGVYDDL 120 FAADDVDAAS SWSLPPASGQ QGQGSPQGSS ETSFATSDSG ADGRSLFDLL SDVDLAACVT 180 GDAAGHLPYG FAPTHHHVAP FWAPPGLAAW TPAWSPAADA ATVVVPAATA VVAAAAEREA 240 RVQRYREKRK NRKFQKTIRY ASRKAYAEAR PRIKGRFVKR APGTAAAALD NGAVDAGGDE 300 AKFWLSFSDD ARDDGVGFYM DAGAYGVVPS F |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 39 | 43 | PRRRK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068390 | 3e-68 | BT068390.1 Zea mays full-length cDNA clone ZM_BFb0159K08 mRNA, complete cds. | |||
GenBank | KJ727888 | 3e-68 | KJ727888.1 Zea mays clone pUT5981 orphans transcription factor (Orphan319) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973094.1 | 1e-101 | zinc finger protein CONSTANS-LIKE 1 | ||||
TrEMBL | K3YJ05 | 1e-100 | K3YJ05_SETIT; Uncharacterized protein | ||||
STRING | Si014224m | 1e-101 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13066 | 22 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 1e-16 | CONSTANS-like 5 |