PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00109.1.g00160.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 500aa MW: 53780.8 Da PI: 9.2465

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00109.1.g00160.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F r L H++ H Zjn_sc00109.1.g00160.1.sm.mk 79 YRCAMCPMAFGRETALFGHMKAH 101 9********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	0.0013	78	103	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.02E-7	78	101	No hit	No description
SMART	SM00355	0.013	79	101	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.951	79	106	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	81	101	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.02E-7	292	319	No hit	No description
SMART	SM00355	36	297	319	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	0.0025	304	320	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MEDGRHRSGC NSSVADVNLS KRSRRSGTSR ELAALQRSSA LQISLVGVSP HREGKVVGGI 60 NIGEPSTDGG VSSVDGQVYR CAMCPMAFGR ETALFGHMKA HERAVSVEVT PPKRIRNYHH 120 PKLKAVKETS SSVADLTLSK GWGATSRRCL RRNHTVVDPP PAAAEDALVV QSRESVSAVL 180 SDLAGMHIRE DDPDQPWVPE TVQDVAAALI SLGATGEVDL IDSHSDDPVV AIAHPAESTE 240 LWRSEFSSPQ VLGGHVASHR RCKKGSKEKL DAQRAAAAMV AAFNSCTALP RIPEKRHACR 300 LRPKVFESGS VLRGHMRTHY IPKTDLDGNA SSFAATVPAS EATPNSSSLA HTMLNQEDEP 360 PVEATKWNRN ASALRARAKV RSKPLPAVLA LPAPNKEAQP PKVLAMAGNG TAGHVQGTMS 420 IGSSHTFTVR TLFPSAPLQN QEENPVEEML AAPGNHKRSI HLFGVNIAED PKEYQQVKRM 480 EPDPYTIVSG AIKPHHPRGQ

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MEDGRHRSGC NSSVADVNLS KRSRRSGTSR ELAALQRSSA LQISLVGVSP HREGKVVGGI  60
NIGEPSTDGG VSSVDGQVYR CAMCPMAFGR ETALFGHMKA HERAVSVEVT PPKRIRNYHH  120
PKLKAVKETS SSVADLTLSK GWGATSRRCL RRNHTVVDPP PAAAEDALVV QSRESVSAVL  180
SDLAGMHIRE DDPDQPWVPE TVQDVAAALI SLGATGEVDL IDSHSDDPVV AIAHPAESTE  240
LWRSEFSSPQ VLGGHVASHR RCKKGSKEKL DAQRAAAAMV AAFNSCTALP RIPEKRHACR  300
LRPKVFESGS VLRGHMRTHY IPKTDLDGNA SSFAATVPAS EATPNSSSLA HTMLNQEDEP  360
PVEATKWNRN ASALRARAKV RSKPLPAVLA LPAPNKEAQP PKVLAMAGNG TAGHVQGTMS  420
IGSSHTFTVR TLFPSAPLQN QEENPVEEML AAPGNHKRSI HLFGVNIAED PKEYQQVKRM  480
EPDPYTIVSG AIKPHHPRGQ

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP40629	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43170.1	4e-06	zinc-finger protein 3