PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00108.1.g00210.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 412aa    MW: 47345.5 Da    PI: 6.5296
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00108.1.g00210.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind96.62.6e-30391432101
                                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT.....TEEE---SSBTTTTX CS
                    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY.....gFkkvkdeekksksk 75 
                                     Fl+k+++++ed++++ ++sws+ gnsfvv+d++ f++ +Lp+ Fkhsnf+SFvRQLn+Y      ++k k++ + +k +
  Zjn_sc00108.1.g00210.1.sm.mkhc  39 FLSKTFDLVEDRSTDAVVSWSRAGNSFVVWDPHVFTEALLPRLFKHSNFSSFVRQLNTYldgtrYWTKYKNQIGFRKVD 117
                                     9**********************************************************66333366666666665557 PP

                                     TTSEEEEESXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  76 ekiweFkhksFkkgkkellekikrkk 101
                                     ++ weF+++ F +g+++ll++ikr+k
  Zjn_sc00108.1.g00210.1.sm.mkhc 118 PDRWEFANEGFLRGQRHLLKTIKRRK 143
                                     ************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-5035142IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.13E-3035142IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.4E-3535142IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.9E-123962IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-2839142IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-127789IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-1290102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDPAAPGIVK EELLEREDVG GRDAPRPMEG LHEVGPPPFL SKTFDLVEDR STDAVVSWSR  60
AGNSFVVWDP HVFTEALLPR LFKHSNFSSF VRQLNTYLDG TRYWTKYKNQ IGFRKVDPDR  120
WEFANEGFLR GQRHLLKTIK RRKPLATAPA SQQRTPVPAL CLEVGEFGFE KEIDRLKRDK  180
NILITEVVEL RQEQQTTREH VHAMEKRLRT AEQKQVQMMG FLARAMRNPE FFQQLVQQQD  240
KRKELEDACS KKRRRPIDNA PFYSPGETSQ SEQLDSPFLF DSGVLDGLTE PGMPELENLA  300
VNIQELGKGS PDDGRMDQAS GQPELNDDFW EELLIDDYGD KAGQPELQAR TEVADEIAQQ  360
LADRWRCIDT GKTTKRKKWN KLHQISDNSF ISTCLSLLKT GQGRMGVRRH CY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-212014210129Heat shock factor protein 1
5d5v_B1e-212014210129Heat shock factor protein 1
5d5v_D1e-212014210129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135141LKTIKRR
2240254KRKELEDACSKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983076.10.0heat stress transcription factor A-2c isoform X1
RefseqXP_004983077.10.0heat stress transcription factor A-2c isoform X1
RefseqXP_022679239.10.0heat stress transcription factor A-2c isoform X1
SwissprotQ338B00.0HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLA0A368SK940.0A0A368SK94_SETIT; Uncharacterized protein
STRINGSi036304m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-101heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]