PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00107.1.g01470.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HB-other
Protein Properties Length: 306aa    MW: 33156.4 Da    PI: 9.2292
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00107.1.g01470.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.4e-081475756
                                    --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
                        Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                                    f ++++ e+e+  ++  n  p ++  + LA+k            ++ +qV +WFqNrR+ ++
  Zjn_sc00107.1.g01470.1.am.mkhc 14 FLPSEVAEMEARLQQlnNTIPGRDVLQSLADKFtasperagraAIQPKQVWNWFQNRRYSHR 75
                                    55677888888888665888999999******99******999****************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.68E-91277IPR009057Homeodomain-like
PROSITE profilePS500719.8311377IPR001356Homeobox domain
CDDcd000868.61E-41375No hitNo description
Gene3DG3DSA:1.10.10.607.3E-61479IPR009057Homeodomain-like
PfamPF000463.2E-51475IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGRPPSSGAP AFRFLPSEVA EMEARLQQLN NTIPGRDVLQ SLADKFTASP ERAGRAAIQP  60
KQVWNWFQNR RYSHRAKSVR PAPPPPPPPS KMAPSGADRL QHATTASAFR AAQTPAAAAA  120
GAHPGSSPAA GTMLLHFCLI GCSSPVTRKY GFVFLDSEQR KMNGSMFVNV CDSVLFHEIV  180
PLRKVCRRPG TNYRLQMFHA SRAAATPSAD VHTPPKQVKK ESASNEKSPA EQKPLKQHKM  240
RDVKTDEVTV VSDHEEAAGN TALPTPSAQA EAHNDSTSDV AMDTDPAPVV EVDDEVQVVD  300
KVKEDK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0985602e-47FP098560.1 Phyllostachys edulis cDNA clone: bphyem205l01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956551.19e-60protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680276.19e-60protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680277.19e-60protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680278.19e-60protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A1D6EP152e-94A0A1D6EP15_MAIZE; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
STRINGSi030167m4e-59(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.33e-30sequence-specific DNA binding transcription factors;sequence-specific DNA binding