PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00107.1.g00410.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 280aa MW: 29711.4 Da PI: 5.2644

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00107.1.g00410.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.5	9.4e-11	179	237	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l++e+ Zjn_sc00107.1.g00410.1.sm.mkhc 179 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLTLLQRDTNGLTTEN 237 9*********************************************9998888777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.5E-16	175	239	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.887	177	240	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.2E-11	179	230	No hit	No description
Pfam	PF00170	2.6E-9	179	236	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.4E-11	179	233	No hit	No description
CDD	cd14703	1.21E-24	180	229	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MNKDKAPMPG DGGLPPESSR VVGAPSKSST PPPECDINRM PDFPTRNTGH RRAHSEILSL 60 PDDLDLSGPG GGDGPSLSDE NDEELFSMFL DVDKLNSSCG MLSEAEAESS SAAVGGGEEA 120 GPGQAPRPRH QHSQSMDESM SIKAEELVGA PGTEGMSPAE AKKAVSAAKL AELALVDPKR 180 AKRIWANRQS AARSKERKMR YIAELERKVQ TLQTEATTLS AQLTLLQRDT NGLTTENSEL 240 KIPLNDTLRA EVQRLKVATG QVASSGGGVR MLVSGVLLCK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:11390974, ECO:0000269\|PubMed:12855676, ECO:0000269\|PubMed:14704272, ECO:0000269\|PubMed:9311985}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008652949.1	1e-149	transcription factor RF2a
Swissprot	Q69IL4	1e-125	RF2A_ORYSJ; Transcription factor RF2a
TrEMBL	A0A1D6I8V3	1e-148	A0A1D6I8V3_MAIZE; Putative transcription factor PosF21
TrEMBL	A0A3L6DZU6	1e-148	A0A3L6DZU6_MAIZE; Transcription factor RF2a
STRING	Sb02g029870.1	1e-141	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4269	38	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-59	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Ordiz MI,Yang J,Barbazuk WB,Beachy RN Functional analysis of the activation domain of RF2a, a rice transcription factor. Plant Biotechnol. J., 2010. 8(7): p. 835-44 [PMID:20408988]