PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00106.1.g01330.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 239aa    MW: 25931.3 Da    PI: 8.123
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00106.1.g01330.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08159199954
                                   HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                    r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Zjn_sc00106.1.g01330.1.sm.mk 159 ARVRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 199
                                   699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.18150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-12155209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-14155211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-13156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-5160199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.75E-6173204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDFDMLMNPT PEAQLELMNA MLQLEQLTAF ADHGAMMMPS APPSPCVQAP HYFTSSVPHM  60
SGGTNARAAY HDQSSQQVTP PSSCNSSSNR SSEHTAQQAP PPPPCASGDG GGDAVGSSAM  120
REMIFRVAAL QPVNIEPEMV RPPKRRNVRI STDPQSVAAR VRRERISERI RILQRLVPGG  180
TKMDTASMLD EAIHYVKFLK TQVQSLERAA AASGRRPATP HEDNGAVAYT TAGRMHGQW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140145RPPKRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269731e-130KJ726973.1 Zea mays clone pUT3674 bHLH transcription factor (bHLH113) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683432.19e-91transcription factor HEC1
TrEMBLA0A0A8YXS61e-108A0A0A8YXS6_ARUDO; Uncharacterized protein
STRINGPavir.Fa00680.1.p5e-92(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.16e-38bHLH family protein