PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00106.1.g01270.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 324aa MW: 33751.2 Da PI: 5.2514

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00106.1.g01270.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.2	3.6e-13	264	307	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r+rr++kNRe+A rsR+RK+a++ eLe +v+ L++ N +L+k+ Zjn_sc00106.1.g01270.1.sm.mkhc 264 RRQRRMIKNRESAARSRARKQAYTMELEAEVQMLKEINAELQKK 307 79*************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.8E-13	260	324	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.496	262	307	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.7E-11	264	307	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.7E-14	264	307	No hit	No description
CDD	cd14707	1.85E-26	264	318	No hit	No description
SuperFamily	SSF57959	3.0E-11	264	308	No hit	No description
PROSITE pattern	PS00036	0	267	282	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MDPKDGERRG PPARQGSIYS LTFDEFQSTL GGMAGGGLGK DFGSMNMDEL LRSIWTAEES 60 QAMASASGSG TAALGAGDDG ALQRQGSLTL PRTLSVKTVD EVWRDFAREG APSAGGCGGE 120 PQPSRQPTLG EMTLEEFLVR AGVVRENPAA AGFPAPIQAV NNGSSIFFGN FGGAASDTGA 180 GAMGFAPVGI GNPSAMGNGL MPGMAGMGGA AVTVSPVDTS VAQLDSVGKG NSDLSSPMAP 240 LPCPFEGVIR GRRSGAGVEK VVERRQRRMI KNRESAARSR ARKQAYTMEL EAEVQMLKEI 300 NAELQKKQCV FLLAVYLARV FPDV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269\|PubMed:10611387}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00087	SELEX	Transfer from AT1G49720	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA). {ECO:0000269\|PubMed:10611387}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973666.1	1e-145	bZIP transcription factor TRAB1
Swissprot	Q6ZDF3	1e-123	TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBL	K3YI35	1e-144	K3YI35_SETIT; Uncharacterized protein
STRING	Si013904m	1e-145	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	8e-40	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kagaya Y,Hobo T,Murata M,Ban A,Hattori T Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] Kobayashi Y, et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] Kobayashi F,Maeta E,Terashima A,Takumi S Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]