PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00106.1.g00590.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 522aa MW: 57961.1 Da PI: 10.3098

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00106.1.g00590.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	60.1	5.4e-19	233	319	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkrtse 74 W++ e+++Li+a++e++++lrrg+lk+++Weev++ + +++ +qC++k+e+l+kry+ + ++ Zjn_sc00106.1.g00590.1.am.mk 233 WSHVETMHLIDAYEERWTALRRGQLKAHQWEEVAAEVaarcaatpGVNVQHKTGTQCRHKLEKLRKRYRTEGARPVT---- 309 ***********************************999996644444488*************98877764.... PP trihelix 75 ssstcpyfdqle 86 s +pyf++++ Zjn_sc00106.1.g00590.1.am.mk 310 --SLWPYFRRMD 319 ..68*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.0E-20	231	321	No hit	No description
SMART	SM00595	2.0E-5	240	326	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence Send to blast
MWYTGMHRCA AVALAARARP VVSDFPSRAA CRRGRQCVAP GHGLEQRASY GGRHASPTQI 60 ACCGGRAPGI TSEPPLPALV PRSLTTGPCI STWLHESLSR HRNATERRPR RGALATAQRR 120 RGPRGRGPAA SRASAARQPP RARATHRVAR HGRQQHHLAR RGGWPNPHPE NSQRPPPPPL 180 IPRPVSSPYP PPPPPPPPSI TPNYSPAVQA MAQDADESPR RPALKKTAPA QPWSHVETMH 240 LIDAYEERWT ALRRGQLKAH QWEEVAAEVA ARCAATPGVN VQHKTGTQCR HKLEKLRKRY 300 RTEGARPVTS LWPYFRRMDR LERGPGATSS ANPPAAESPP AGASDEEEVQ EEEEEEDEEE 360 EEEELIPRNN NTRSINGIIR EFGSGLAPRH PQLQQPPPSI TPSTAPPRKR VSYEAFQARA 420 AAPEAEKVKE DEVEMARRPF RYGGANAELS AVLRDFSEGF MRLERRRMEV QWEIEQGWKE 480 TEARQTRMLQ DAQHGLCDTI AVACAVPPKK ARRDHGSNGD GF

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence Send to blast

MWYTGMHRCA AVALAARARP VVSDFPSRAA CRRGRQCVAP GHGLEQRASY GGRHASPTQI  60
ACCGGRAPGI TSEPPLPALV PRSLTTGPCI STWLHESLSR HRNATERRPR RGALATAQRR  120
RGPRGRGPAA SRASAARQPP RARATHRVAR HGRQQHHLAR RGGWPNPHPE NSQRPPPPPL  180
IPRPVSSPYP PPPPPPPPSI TPNYSPAVQA MAQDADESPR RPALKKTAPA QPWSHVETMH  240
LIDAYEERWT ALRRGQLKAH QWEEVAAEVA ARCAATPGVN VQHKTGTQCR HKLEKLRKRY  300
RTEGARPVTS LWPYFRRMDR LERGPGATSS ANPPAAESPP AGASDEEEVQ EEEEEEDEEE  360
EEEELIPRNN NTRSINGIIR EFGSGLAPRH PQLQQPPPSI TPSTAPPRKR VSYEAFQARA  420
AAPEAEKVKE DEVEMARRPF RYGGANAELS AVLRDFSEGF MRLERRRMEV QWEIEQGWKE  480
TEARQTRMLQ DAQHGLCDTI AVACAVPPKK ARRDHGSNGD GF

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT040453	1e-114	BT040453.1 Zea mays full-length cDNA clone ZM_BFc0095C18 mRNA, complete cds.
GenBank	EU954325	1e-114	EU954325.1 Zea mays clone 1462507 hypothetical protein mRNA, complete cds.
GenBank	KJ727853	1e-114	KJ727853.1 Zea mays clone pUT5898 trihelix transcription factor (THX8) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820374.1	1e-142	uncharacterized protein LOC112896572
TrEMBL	A0A0A9FZH6	1e-143	A0A0A9FZH6_ARUDO; Uncharacterized protein
STRING	Pavir.J15698.1.p	1e-132	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10078	29	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-17	Trihelix family protein