PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00103.1.g00280.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 531aa    MW: 55985.1 Da    PI: 6.6462
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00103.1.g00280.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1954.9e-601545262374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.....sse 76 
                                   ++lL  cA av++g+l+++q+l   l elas +gd+++Rl+a+ ++AL +rl    +++ ++al++ + +  +      + 
  Zjn_sc00103.1.g00280.1.am.mk 154 EQLLNPCAAAVEAGNLSRVQHLFYVLGELASFSGDANHRLVAHGLRALTRRLPAaVGPGAAAALRVPPCECPTpafpgAEP 234
                                   689*************************************************99789999999966555544445776333 PP

                          GRAS  77 elaalkl..fsevsPilkfshltaNqaIleav.ege..ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgsp 150
                                   +l+  +l  f+evsP++ + + +aN aI +a+  g+  + +H++D+++s+G+QWp+Ll++L+  p  + pps+R+T+ g+ 
  Zjn_sc00103.1.g00280.1.am.mk 235 RLFRASLikFNEVSPWFALPNALANAAIAQAAvPGAepRPLHVVDLGVSHGVQWPTLLESLTRLPgaRVPPSVRLTVAGPT 315
                                   444334479********************986244467889*********************99965669*********96 PP

                          GRAS 151 esg.....skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserde 226
                                   ++       +         L ++A+++++++ +    a++le++  + + + pgEal+V+l+++l +        ++er++
  Zjn_sc00103.1.g00280.1.am.mk 316 ATPpapfsLSPPGYDFSPHLLRYAKSINLQLAIGR--ASSLESV--HGF-TTPGEALVVCLQFRLGHAS------TDERSD 385
                                   6658777766777889999*************997..5666666..444.678**********999987......444779 PP

                          GRAS 227 vLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre 307
                                   +L+ v++l+P++vv++e +a   +++ + +f+  le  + +++s++a +    + r   E++ll+ e+   va+e a    
  Zjn_sc00103.1.g00280.1.am.mk 386 ILNKVRGLNPELVVLSELDAGG-DGTMAGEFAARLELLWRFLESTSAAF----KGRDGDEKRLLEAEAGTSVAAEAAG--- 458
                                   *****************99986.999*******************9997....6677778888999999999999998... PP

                          GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve....eesgslvlgWkdrpLvsvSaWr 374
                                     e  e Wrer+ +aGF++++++++a+++ak+llrk++  g+++     ++ g++ l Wk++p+ ++S Wr
  Zjn_sc00103.1.g00280.1.am.mk 459 --EGREAWRERMAAAGFEEAAFGDEAVESAKSLLRKYD-SGWEMAapasSSAGAVALRWKGQPVSFCSLWR 526
                                   ..8889********************************.55666544545577777**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.915127503IPR005202Transcription factor GRAS
PfamPF035141.7E-57154526IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MHASSCELAC MKAMNCREQE HHELEATASN NGLDWIEDSI SFLTADFDIG GWWSSAPPAA  60
QQDDIGSVVA QTLSPPAPLP TTSSPLPQAS PSIASPAVSS PSEPSSKKRK SPGHRASGQS  120
GSNQRRRAEQ DRQVGKKGGG KGGAGSDRDT RWAEQLLNPC AAAVEAGNLS RVQHLFYVLG  180
ELASFSGDAN HRLVAHGLRA LTRRLPAAVG PGAAAALRVP PCECPTPAFP GAEPRLFRAS  240
LIKFNEVSPW FALPNALANA AIAQAAVPGA EPRPLHVVDL GVSHGVQWPT LLESLTRLPG  300
ARVPPSVRLT VAGPTATPPA PFSLSPPGYD FSPHLLRYAK SINLQLAIGR ASSLESVHGF  360
TTPGEALVVC LQFRLGHAST DERSDILNKV RGLNPELVVL SELDAGGDGT MAGEFAARLE  420
LLWRFLESTS AAFKGRDGDE KRLLEAEAGT SVAAEAAGEG REAWRERMAA AGFEEAAFGD  480
EAVESAKSLL RKYDSGWEMA APASSSAGAV ALRWKGQPVS FCSLWRPACS I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-2714952883475Protein SHORT-ROOT
5b3h_B1e-2714952729420Protein SHORT-ROOT
5b3h_E1e-2714952729420Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318969.10.0nodulation-signaling pathway 1 protein
TrEMBLA0A1E5VYC70.0A0A1E5VYC7_9POAL; Nodulation-signaling pathway 1 protein
STRINGGRMZM2G110067_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-73GRAS family protein