PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00102.1.g00170.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 486aa    MW: 51031.3 Da    PI: 5.6609
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00102.1.g00170.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.44e-16291336555
                                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     hne Er+RRdriN+++ +L++l+P++      K +Ka++L ++++Y+k+Lq
  Zjn_sc00102.1.g00170.1.sm.mkhc 291 HNESERKRRDRINQKMKTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 336
                                     *************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.025286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-20289359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.35E-18291340No hitNo description
PfamPF000101.1E-13291336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-18291348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-18292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MNQCVPSWDL DDAAAGGLNT ASAATDGVHH RAGVDGAGVS FSPLVVPMSD RYYDVAELTW  60
EKGNISSHGL LNRPAPTKCP PAASSTRLQA LGGGGEPAGG GDRETLEAVV GEAAARSHFP  120
AQPSLPATPW LGLGAPLPAD ALVPCATRDD QAAEEEARRK RARVVGEDGH GLLCASQGST  180
ATGRRGESAL PALDAACGTG DDDVCGFTTT TNNSTSLDRD DNKGSPDTEN TSIGGGASDS  240
RCFSLRSQAN CLLITLPRDG LCDEGENVVI NGEPAMRSSV STKRSRAAAI HNESERKRRD  300
RINQKMKTLQ KLVPNSSKTD KASMLDEVID YLKQLQAQVQ VMSRMSSMMM PMAMPQLQMS  360
VLAQMAQMAQ MAQMAQGMMN MGSLSQPGYV PPPMMHPPPP PFVPLPWDAG AAGASSGAGA  420
VADRAPQPGG SATIPDAFAA FLACQQAQQN GQQQQQPGGM EAYNRMLAMW HKLSQQQPSQ  480
PSNTKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294299ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614201e-109AK361420.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1140E09.
GenBankAK3678141e-109AK367814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062O04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660002.11e-166transcription factor UNE10 isoform X2
TrEMBLA0A368SN181e-165A0A368SN18_SETIT; Uncharacterized protein
STRINGPavir.Ia02188.1.p1e-161(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74743140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.14e-28bHLH family protein