PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00102.1.g00120.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 704aa    MW: 75095 Da    PI: 10.9357
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00102.1.g00120.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.51.6e-17603637135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  Zjn_sc00102.1.g00120.1.am.mk 603 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 637
                                   *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.5E-16597647IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.3E-13601635IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.227601633IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.33E-13601661No hitNo description
CDDcd002021.79E-11602649No hitNo description
PfamPF003202.6E-15603637IPR000679Zinc finger, GATA-type
PROSITE patternPS003440603628IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MDQGRRRTGG REGNGHRGVH VSDTRLLRGS VQASSRTRSR SRRPQSRPAS VVSTIYGHYA  60
ANKSIRTLEY FFFLAGCTTD YRHRLFPAGF TILLRRGRTR SPLAGGGERS NEASPPAMSM  120
PWSTTGTGKK GKKREAGVVE KKVNARWRGQ EVPRAPALHV ALTSAQPPFT CGNYHRPFHC  180
QQKQTAAAGN QIHRRLAPPH RAPKQHADVG AREQSGRGTR LCSVPARKKK DSSMDPAPRA  240
RTLSPSQTRT PDCGAHGNGR RRDALNCARR ERQRRARGRA ANEGRAPPRN GSRFLRTPGG  300
EEREGQKSTG RLTILGAWAW QTIPPPCPCV RTTPGPASCP RMASEWEMAA MGVDLGMGMS  360
AYHHHHHNAS GITTAPMSSH HGGGGGGYST AHHHYYGMAP VGDAMRVDDL LDLSNAGAHE  420
FFPTAAAAAT ENGHHSGAMC EPSPKGNSSD HQTSFPSFAD EFYIPSEEAA ELEWLSKFVD  480
DSYSDIPNYS SAAHAAMAAA AVGNGDGNST GQDGCVTAAP GRGARSKRSR AAAVAAAAWH  540
SLMPRPPAQS SPSSSCSSSD LPSSKPGRPN GSNGSRGSKK SPGPGGAAAA GEAGLEGGGV  600
RRCTHCASEK TPQWRTGPLG PKTLCNACGV RFKSGRLVPE YRPAASPTFL LTQHSNSHRK  660
VMELRRQKEL LMIRGSHRDA TAAAAAAGTA GPRPDLMFRD YGVC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795835.11e-165GATA transcription factor 2-like
TrEMBLA0A2S3INR41e-164A0A2S3INR4_9POAL; GATA transcription factor
TrEMBLA0A2T7C9Z21e-164A0A2T7C9Z2_9POAL; GATA transcription factor
STRINGSi036273m1e-161(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46212955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.12e-41GATA transcription factor 2