PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00101.1.g00230.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 406aa MW: 42926.9 Da PI: 10.0995

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00101.1.g00230.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	112.1	2.5e-35	172	232	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ al+cprC++++tkfCyynny++ qPry+CkaC+ryWt+GG+ rn+PvGg++rk++k+s Zjn_sc00101.1.g00230.1.am.mk 172 PDVALACPRCNAMETKFCYYNNYNMLQPRYLCKACKRYWTHGGSQRNIPVGGASRKQNKRS 232 567899**************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-21	169	231	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.1E-30	175	230	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.767	176	230	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	178	214	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MDADVICTSI MPGDMWGPAS RGPTYQCPLY TRVTSRYLCS PLTLTVARPT TFLFVVSRCA 60 NFTLFLRTAR AVLSPFFSLS SHLAAPNIKW KGALSPSVAL SIPTLLQSSS DEIKGTLVPE 120 KMTNSKKSNT SAGASSAHSN NIQQEARDMR QARAARQQAA ANVGERRPRP QPDVALACPR 180 CNAMETKFCY YNNYNMLQPR YLCKACKRYW THGGSQRNIP VGGASRKQNK RSSASSSLPA 240 AAASSSSVIN KELQQQLLPA APMIEAAADF SNVFPSFMPT GFEHHSNQLP FSPAPAPLPL 300 PTLLPPVPML APDAGTPSFL DMLRGGFLDY QTNGFYAPAT ASSGMEALPF GPGVQPGVAG 360 VLQGGVAAPT GGRVDATAAG QGAAWPKPQV RGNQQGGAGA PGNGRA

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MDADVICTSI MPGDMWGPAS RGPTYQCPLY TRVTSRYLCS PLTLTVARPT TFLFVVSRCA  60
NFTLFLRTAR AVLSPFFSLS SHLAAPNIKW KGALSPSVAL SIPTLLQSSS DEIKGTLVPE  120
KMTNSKKSNT SAGASSAHSN NIQQEARDMR QARAARQQAA ANVGERRPRP QPDVALACPR  180
CNAMETKFCY YNNYNMLQPR YLCKACKRYW THGGSQRNIP VGGASRKQNK RSSASSSLPA  240
AAASSSSVIN KELQQQLLPA APMIEAAADF SNVFPSFMPT GFEHHSNQLP FSPAPAPLPL  300
PTLLPPVPML APDAGTPSFL DMLRGGFLDY QTNGFYAPAT ASSGMEALPF GPGVQPGVAG  360
VLQGGVAAPT GGRVDATAAG QGAAWPKPQV RGNQQGGAGA PGNGRA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004980592.1	4e-46	dof zinc finger protein PBF
Swissprot	O24463	3e-43	PBF_MAIZE; Dof zinc finger protein PBF

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22474	3	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-29	Dof family protein

Publications ? help Back to Top
Lang Z, et al. Defining the Role of prolamin-box binding factor1 Gene During Maize Domestication. J. Hered., 2014 Jul-Aug. 105(4): p. 576-582 [PMID:24683184] Zhang Z,Zheng X,Yang J,Messing J,Wu Y Maize endosperm-specific transcription factors O2 and PBF network the regulation of protein and starch synthesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(39): p. 10842-7 [PMID:27621432]