PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00101.1.g00220.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 643aa MW: 67990.6 Da PI: 9.8514

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00101.1.g00220.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	111.8	3.1e-35	223	283	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ al+cprCd+tntkfCyynny++ qPry+CkaC+ryWt+GG+ rn+PvGg++rk++k+s Zjn_sc00101.1.g00220.1.am.mk 223 PDVALPCPRCDATNTKFCYYNNYNMLQPRYLCKACKRYWTHGGSQRNIPVGGASRKQNKRS 283 567899**************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-21	221	282	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.2E-30	226	281	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.251	227	281	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	229	265	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence Send to blast
MIWSWTHPDA DTRRPVPSHH PHAVPPFHVY GSAAVTLGIQ MPLRSLNIGG REQHKHQRNN 60 TARLLVEQAV GMLPPGCTVD ALQGARGACV RQPCRASCLH GNSVSISISS CMHRVLADVI 120 CTPIMPGDMW GPFYPLPPHR PRSPLPDFLV VLSPHHVQYK TEGNLFCGSE EKMTNSKKSN 180 TSAGASSAHS NNIQQEARNM RQARAARQQV AANAGERRPR PQPDVALPCP RCDATNTKFC 240 YYNNYNMLQP RYLCKACKRY WTHGGSQRNI PVGGASRKQN KRSSASLSLP AAASSSSVIN 300 KELQQQLLPA APMIEPAADF NVFPSFMSTG FEHHSNQLPF SPAPGPLPLP TLLPPAPVLA 360 PDAGTPSFLD MLRGGFLDYQ TNGFYAPATP STGMEAPPPL PFGGAAQPGV AGGRQGGGAA 420 PTGGHVDATA AGQGAAWPKP QGRTLSQPFL SPSRHIVAVR ASFFSTPPPS PLSAPDPTPP 480 RTATAQTSPS AVSLPSARHS LCSLSPTCVL YRTSAARCRA HPSPPPNPSP GLCTTPPLAS 540 LVVPYARGRG VHSALLVPVV SSLPRQSVNR IGCGIDGSGF ERQLGTVVAA CSGRGVARLS 600 LLACTPVHTR ALPALHPHSC ARLSSYQLVA SVEAGGCCFA HVI

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence Send to blast

MIWSWTHPDA DTRRPVPSHH PHAVPPFHVY GSAAVTLGIQ MPLRSLNIGG REQHKHQRNN  60
TARLLVEQAV GMLPPGCTVD ALQGARGACV RQPCRASCLH GNSVSISISS CMHRVLADVI  120
CTPIMPGDMW GPFYPLPPHR PRSPLPDFLV VLSPHHVQYK TEGNLFCGSE EKMTNSKKSN  180
TSAGASSAHS NNIQQEARNM RQARAARQQV AANAGERRPR PQPDVALPCP RCDATNTKFC  240
YYNNYNMLQP RYLCKACKRY WTHGGSQRNI PVGGASRKQN KRSSASLSLP AAASSSSVIN  300
KELQQQLLPA APMIEPAADF NVFPSFMSTG FEHHSNQLPF SPAPGPLPLP TLLPPAPVLA  360
PDAGTPSFLD MLRGGFLDYQ TNGFYAPATP STGMEAPPPL PFGGAAQPGV AGGRQGGGAA  420
PTGGHVDATA AGQGAAWPKP QGRTLSQPFL SPSRHIVAVR ASFFSTPPPS PLSAPDPTPP  480
RTATAQTSPS AVSLPSARHS LCSLSPTCVL YRTSAARCRA HPSPPPNPSP GLCTTPPLAS  540
LVVPYARGRG VHSALLVPVV SSLPRQSVNR IGCGIDGSGF ERQLGTVVAA CSGRGVARLS  600
LLACTPVHTR ALPALHPHSC ARLSSYQLVA SVEAGGCCFA HVI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	411	417	GGRQGGG

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22474	3	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	3e-29	Dof family protein