PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00100.1.g00580.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 429aa MW: 44996.3 Da PI: 8.2688

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00100.1.g00580.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.4	1.8e-39	102	161	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s++tkfCy+nny++sqPr+fCk+C+ryWt+GGa+rnvPvG+grrknk++ Zjn_sc00100.1.g00580.1.am.mkhc 102 PDKVLPCPRCNSMDTKFCYFNNYNVSQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKNA 161 78999****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	98	159	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.2E-32	103	160	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.994	106	160	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	108	144	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MGECRGGGGG AGDCLIKLFG KTIPVPEAGD AKDLQHSSGS SSSIDSDANK ENANQDTSDP 60 PPQPEVVDAE DPKSSSSPPE PRQPSGGADD EASNHKEKLK KPDKVLPCPR CNSMDTKFCY 120 FNNYNVSQPR HFCKNCQRYW TAGGAMRNVP VGAGRRKNKN AVAASHFLQK VRAAVPVGGD 180 PLKTNGTVLS FGAHGAAPAL DLAEQVVGHL KEKMLVPVGN AGNHQSVVDP CSDVSSTRDA 240 KNLSVNGVQH PANMNGGATM WPYGCAPPSQ AYYPSGIAIP IYPAAPGYWG CMVPGGWSPL 300 PWPLQPPTQG LSSPTSTAPS VSSGAGHSLT LGKHAREGDE GRSHGSGKVW APKTIRIGDA 360 DEVAKSSIWS LIGIKGDKQN TDTDGRKNGT VFEPKHEAKS AKQAMITSSP LLHANPVALT 420 RSLTFQEGS

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MGECRGGGGG AGDCLIKLFG KTIPVPEAGD AKDLQHSSGS SSSIDSDANK ENANQDTSDP  60
PPQPEVVDAE DPKSSSSPPE PRQPSGGADD EASNHKEKLK KPDKVLPCPR CNSMDTKFCY  120
FNNYNVSQPR HFCKNCQRYW TAGGAMRNVP VGAGRRKNKN AVAASHFLQK VRAAVPVGGD  180
PLKTNGTVLS FGAHGAAPAL DLAEQVVGHL KEKMLVPVGN AGNHQSVVDP CSDVSSTRDA  240
KNLSVNGVQH PANMNGGATM WPYGCAPPSQ AYYPSGIAIP IYPAAPGYWG CMVPGGWSPL  300
PWPLQPPTQG LSSPTSTAPS VSSGAGHSLT LGKHAREGDE GRSHGSGKVW APKTIRIGDA  360
DEVAKSSIWS LIGIKGDKQN TDTDGRKNGT VFEPKHEAKS AKQAMITSSP LLHANPVALT  420
RSLTFQEGS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582399	2e-97	KC582399.1 Sorghum bicolor dof2 protein (dof2) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983151.1	0.0	cyclic dof factor 1
TrEMBL	K4AA81	0.0	K4AA81_SETIT; Uncharacterized protein
STRING	Si035787m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-62	cycling DOF factor 2